BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941896
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23710.1 | Symbols: | DNA binding;DNA-directed RNA polymera... 929 0.0
> AT5G23710.1 | Symbols: | DNA binding;DNA-directed RNA polymerases
| chr5:7996456-7997479 REVERSE LENGTH=878
Length=878
Score = 929 bits (503), Expect = 0.0
Identities = 657/731 (90%), Gaps = 12/731 (2%)
Strand=Plus/Plus
Query 7 GTGAATTTGTAACAATGAGTAAACGAAAGCGTCCGGATCCGAAATCATCGGGAAGTAATC 66
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 100 GTGAATTTGTAAGAATGAGTAAACGAAAACGTCCGGATCCGAAATCATCGGGAGGTGATC 159
Query 67 TAAACGAACCACACGAGAAGCTTCTTCTCAATCTGATTCGAAGCAGCCAA-GAAAAGGGT 125
||||||| |||||||||||| ||||| |||||||||||| | |||| ||| | ||
Sbjct 160 TAAACGAGCCACACGAGAAGAAGCTTCTGGATCTGATTCGAATAAACCAAGGAAGA-GGC 218
Query 126 GCAACGATGAACGAATTGAAACGCGATAAAACTATCCCAGCAACTATGA-TTACTCGATT 184
||||| ||| ||||||||||||||| ||||| |||||||||||||| | ||||||||||
Sbjct 219 GCAACTATGTTCGAATTGAAACGCGAGAAAACGATCCCAGCAACTAT-AGTTACTCGATT 277
Query 185 GACT-ACTTCTCTTA-AGAAGAAGAATCTCATCAAAGAAGTAGCAAGCATGAACAACAGA 242
|| | |||||| || ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 278 GA-TCGCTTCTC-TACGGAAGAAGAATCTCATCAAAGAAGTAGCAAACATGAACAACAAA 335
Query 243 GGTGTCAAACATTTTCTTGCTATGGAGTTTGAGCCTGGTAAG-GAACTTACTGGTGGGGA 301
||||||||||||| |||||| ||||||||||||||| ||| | |||||||||||||| ||
Sbjct 336 GGTGTCAAACATTATCTTGCAATGGAGTTTGAGCCTTGTA-GTGAACTTACTGGTGGTGA 394
Query 302 ATGGTACATTGATGGAACGCTTAACCTGTCGAAAATCGAAGATTTGAAGGCGAAATGTGT 361
|||||||| ||||||| | ||| ||||||||||||||||||||||||| || || |||||
Sbjct 395 ATGGTACACTGATGGAGCTCTTGACCTGTCGAAAATCGAAGATTTGAAAGCCAAGTGTGT 454
Query 362 TATGATTTTGGAGAGGCATAGGCATAGAGTTGTTACGTTGGAGGTTATGTGTGGGTATTT 421
||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||
Sbjct 455 GATGATTTTGGAGAGGCATAGGCAGAGGGTTGTTACTTTGGAGGTTTTGTGTGGGTATTT 514
Query 422 TGTTAAAGAGGAGAAGTTGAGTGTAGAGCAGACTAAGGAGATACTTAAGAACTTGGTTTT 481
|||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 515 TGTTAAAGAGGAGAAGCTGAGTGTTGATCAGACTAAGGAGATACTTAAGAACTTGATTTT 574
Query 482 GGATAATGTGATCATGGAGGTGAAGAGTAATGGATTGAATGAGTTTGCTTCTACGAGAAT 541
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 575 GGATAATTTGATCATGGAGGTGAAGAGTAATGGAATGAATGAGTTTGCTTCTACGAGAAT 634
Query 542 TGGAGAAGTTTGCTACAAGTTGACGGGGAAGAAA-TCCGGTAATGGTGAAGCGAGAGCTG 600
|||||||||||||||| |||||| ||||| ||| | ||||||||| ||| |||||||||
Sbjct 635 CGGAGAAGTTTGCTACAGGTTGACCGGGAA-AAAGTTCGGTAATGGCGAACCGAGAGCTG 693
Query 601 GAGCTTTTGCTTCGGTGCCTTGCGGGGCTTGTCCGCATATAGGGCTTTGTTCACCTGATG 660
|||||||||||||| | |||||||||| |||||||||||||| | | |||||||||||||
Sbjct 694 GAGCTTTTGCTTCGATTCCTTGCGGGGTTTGTCCGCATATAGCGATCTGTTCACCTGATG 753
Query 661 GTGTTATCTCTCCGACTACATGTGTTTATTTCCAGAAATGGTTAGACTTTTAGCACTCTC 720
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 754 GTGTTATCTCTCCCACTACATGTGTTTATTTTCAGAAATGGTTAGACTTTTAGCACTCTC 813
Query 721 TGTTTTGTTTT 731
| |||| ||||
Sbjct 814 TTTTTTTTTTT 824
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5