BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941899
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23730.1 | Symbols: RUP2 | Transducin/WD40 repeat-like super... 1751 0.0
> AT5G23730.1 | Symbols: RUP2 | Transducin/WD40 repeat-like superfamily
protein | chr5:8005234-8006630 FORWARD LENGTH=1397
Length=1397
Score = 1751 bits (948), Expect = 0.0
Identities = 1084/1149 (94%), Gaps = 11/1149 (1%)
Strand=Plus/Plus
Query 1 CAGTCATTACTCTGTTTTCATATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 32 CAGTCATTACTCTGTTTTCATATGAACACTCTTCATCCTCACAAGCAGCAACAAGAACAA 91
Query 61 G---------AAGACCAAGCTAAACATGAATGGGATCTTtctctctccaccgtcgtctct 111
| |||| |||||| | | ||||||||||||||||||||||||||||| |||
Sbjct 92 GCACAACAACAAGAAGAAGCTAGATACGAATGGGATCTTTCTCTCTCCACCGTCGTATCT 151
Query 112 tcctcctcctcctccgcctccGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAAC 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TCCTCCTCCTCCTCCGCCTCCGACGTTATCGGAGCTATTGAATTCGATCCCACTGATAAC 211
Query 172 ATCGTCGCTACCGCTGGGATATCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTA 231
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 212 ATCGTCGCTACCGCCGGGATTTCAAGAAAGATTCGTTTTTACGGCCTCCCTTCTCTTTTA 271
Query 232 CGTACCAACGCCGTCTCCGGCACCGGAGTCTCCTTCGTCGATCAAGCCACCGCCTGCGAG 291
|||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 272 CGTAACAACGCTGTCTCCGGTACCGGAGTTTCCTTCGTCGATCAAGCCACCGCCTGCGAA 331
Query 292 TATTACATCTGTACGCCGGC-AAAGCTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGG 350
|||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 332 TATTACATCTGTACTCCGGCGAAA-CTTAGTAGTCTCCGGTGGAGACCCGGGTCGGGCGG 390
Query 351 TCGGGTCATCGGGTCGGGAGATTACGACGGCGTAGTGACCGAGTACGATCTAGAGAAGAG 410
|||||| || |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 391 TCGGGTTATTGGGTCGGGAGATTACGACGGCGTAGTGATGGAGTACGATCTTGAGAAGAG 450
Query 411 GACGCCGGTATTCGAGAGGGACGAGCACGGTGGCCGTCGCGTATGGAGCGTCGATTACAC 470
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 451 GACGCCGGTATTCGAAAGGGACGAGCACGGTGGTCGTCGTGTATGGAGCGTAGATTACAC 510
Query 471 TCGCCACGGCGGTGCTTCCTTGGTGGGAGCGTCGGGATCGGACGACGGGACTATGCAAGT 530
||| |||||||| ||||| |||||| |||||||||||||| |||||||||||||||||
Sbjct 511 TCGTCACGGCGGCGCTTCGACGGTGGGCGCGTCGGGATCGGATGACGGGACTATGCAAGT 570
Query 531 ATGGGATCCGAGGTGTCCGCCGGAGGAATCTGTCAGCGTTGTACGACCGTCGGGGATTTG 590
|||||||||||||||||||||||| ||||||||| | |||||||||||| ||||||||||
Sbjct 571 ATGGGATCCGAGGTGTCCGCCGGAAGAATCTGTCGGTGTTGTACGACCGGCGGGGATTTG 630
Query 591 CCGGAGCGCTGTTTGTTGCGTCGAGTTTGATCCTTCCGGTGGACCAGCCGTGGCCGTCGG 650
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 631 CCGGAGTGCTGTTTGTTGCGTCGAGTTCGATCCTTCCGGTGGACCAGCCGTGGCCGTCGG 690
Query 651 ATGCGCTGATCGGAAAGGGTACGTGTACGATATAAGGAAACTCGTTGACCCGGCGTTGAC 710
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 691 ATGCGCTGATCGGAAAGGGTACGTTTACGATATAAGGAAACTCGTTGACCCGGCGTTGAC 750
Query 711 TTTACAAGGTCATACTAAAACGGTGTCGTATGTGAGGTTTCTCGACGGTGGTACGGTGGT 770
||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 751 TTTACAAGGTCATACGAAAACGGTGTCGTATGTGAGGTTCCTCGACGGTGGGACGGTGGT 810
Query 771 GACGGCAGGCACGGACGGTTGTTTGAAGTTGTGGAGCGTGGAGGACGGGCGCGTGATTCG 830
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 811 GACGGCAGGTACGGACGGTTGTTTGAAGCTGTGGAGCGTGGAGGATGGGCGCGTGATTCG 870
Query 831 CACGTACGAAGGGCACGTGAATAATCGAAACTTCGTGGGGTTATCTGTGTGGAGAAACGG 890
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 871 CACGTACGAAGGGCATGTGAATAATCGGAACTTCGTGGGGTTATCTGTGTGGAGAAACGG 930
Query 891 GGCGTTGTTTGGTTGCGGATCAGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGG 950
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 931 CGCGTTGTTTGGTTGTGGATCGGAAAACAACAGGGTGTTTGTGTACGATAGGAGATGGGG 990
Query 951 GAAGCCGGTTTGGGTAGATGGGTTTGAACCGGTTGGTATGAATTCTGGTTCGGATAGGCG 1010
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 991 GAAGCCGGTTTGGGTAGATGGGTTTGAACCAGTTGGTATGAATTCTGGTTCGGATAAGCG 1050
Query 1011 GTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGCACCTTAGTGGCTGG 1070
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1051 GTTCGTGAGTAGCGTCTGTTGGAGGCAATCAGGTGTGGACCAGTGTACCCTAGTGGCTGG 1110
Query 1071 AGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAGTATTCTTCTTA 1130
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1111 AGGATCTGATGGAGTATTACAGGTTTACGTGGGCAAAAGAAAACCATAGTGTTCTTCTTA 1170
Query 1131 ATTTATCAT 1139
|||||||||
Sbjct 1171 ATTTATCAT 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55873206585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5