BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941900
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23740.1 | Symbols: RPS11-BETA | ribosomal protein S11-beta ... 841 0.0
AT3G48930.1 | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-... 604 2e-172
> AT5G23740.1 | Symbols: RPS11-BETA | ribosomal protein S11-beta
| chr5:8008010-8009436 REVERSE LENGTH=827
Length=827
Score = 841 bits (455), Expect = 0.0
Identities = 499/520 (96%), Gaps = 3/520 (1%)
Strand=Plus/Plus
Query 1 GAGAGCAGCAATCAGTAGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 GAGAGCAGCAATCAGTAGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCA 146
Query 61 AAGTCTTCCTAAGCTCGAAGACATCTGGGAAAGGAAAGAGACCTGGAAAAGGTGGAAACC 120
| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 147 AGGTCTTCCTTAGCTCGAAGATATCTGGGAAAGGAAAGAGACCTGGTAAAGGTGGAAACC 206
Query 121 GTTTCTGGAAGAACATTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGAAGGAGCTT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 207 GTTTCTGGAAGAACATTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTT 266
Query 181 ACATTGACAGTAAATGTCCATTCACTGGAACTGTTTCTATCAGAGGTCGTATCCTAGCTG 240
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct 267 ACATTGACAGTAAATGTCCATTCACTGGAACCGTTTCTATCAGAGGACGTATCTTAGCTG 326
Query 241 GTACTTGCCACAGTGCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GTACTTGCCACAGTGCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACT 386
Query 301 TTGTGAAGAAGTATCAACGATATGAGAAGAGACATTCCAATATCCCTGCTCATGTCTCAC 360
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 387 TTGTGAAGAAGTATCAACGATATGAGAAGAGACATTCCAACATCCCTGCCCATGTCTCAC 446
Query 361 CGTGCTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGA 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 CGTGTTTCCGTGTCAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGA 506
Query 421 AGACAGTCAGGTTCAATGTGTTGAAGGTGATCCCAGCGGGCGCATCCGCCTTTGGTAAGA 480
|||| || |||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
Sbjct 507 AGACGGTTAGGTTCAATGTGCTGAAGGTGATTCCAGCGGGTGCATCTGCCTTTGGTAAAA 566
Query 481 AGGCCTTCACTGGAGTGTAAGAGTTTTGAGAAAGTC-TGG 519
||||||||||||||||||||||||||||| || ||| |||
Sbjct 567 AGGCCTTCACTGGAGTGTAAGAGTTTTGA-AA-GTCATGG 604
> AT3G48930.1 | Symbols: EMB1080 | Nucleic acid-binding, OB-fold-like
protein | chr3:18140771-18142281 REVERSE LENGTH=821
Length=821
Score = 604 bits (327), Expect = 2e-172
Identities = 438/491 (89%), Gaps = 9/491 (2%)
Strand=Plus/Plus
Query 17 AGCCATGGCTGAGCAGACTGAGAAAGCTTTTCTTAAGCAACCCAAAGTCTTCCTAAGCTC 76
||||||||| || |||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 89 AGCCATGGCGGAACAGACTGAGAAAGCTTTTCTTAAGCAGCCTAAGGTCTTCCTTAGCTC 148
Query 77 GAAGACATCTGGGAAA-GGAAAGAGACCTGGAAAAGGTGGAAACCGTTTCTGGAAGAACA 135
||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GAAGAAATCT-GGAAAGGGAAAGAGACCTGGAAAAGGTGGAAACCGTTTCTGGAAGAACA 207
Query 136 TTGGTTTGGGTTTCAAGACTCCTCGTGAAGCCATTGAAGGAGCTTACATTGACA-GTAAA 194
|||||||||| |||||||||||||||||||||||||| ||||||||| |||||| | |||
Sbjct 208 TTGGTTTGGGCTTCAAGACTCCTCGTGAAGCCATTGATGGAGCTTACGTTGACAAG-AAA 266
Query 195 TGTCCATTCACTGGAACTGTTTCTATCAGAGGTCGTATCCTAGCTGGTACTTGCCACAGT 254
|| || ||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 267 TGCCCCTTCACTGGAACTGTTTCCATTAGAGGTCGTATCTTAGCTGGTACTTGCCACAGT 326
Query 255 GCCAAGATGCAGAGAACCATCATTGTTCGTAGGAATTACCTTCACTTTGTGAAGAAGTAT 314
|| || |||||||| ||||| || || || ||| ||||||||||||||||||||||||||
Sbjct 327 GCGAAAATGCAGAGGACCATTATCGTGCGAAGGGATTACCTTCACTTTGTGAAGAAGTAT 386
Query 315 CA-ACGATATGAGAAGAGACATTCCAATATCCCTGCTCATGTCTCACCGTGCTTCCGTGT 373
|| | | ||||||||||| ||||| || || || |||||||||||||| |||||||||||
Sbjct 387 CAGAGG-TATGAGAAGAGGCATTCAAACATTCCGGCTCATGTCTCACCATGCTTCCGTGT 445
Query 374 CAAGGAAGGTGACCATGTCATCATTGGCCAATGCAGGCCGTTGTCGAAGACAGTCAGGTT 433
|||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 446 TAAGGAAGGAGACCATATCATCATTGGCCAATGCAGGCCATTGTCGAAGACAGTGAGGTT 505
Query 434 CAATGTGTTGAAGGTGATCCCAGC-GGG-CG-CATCCGCCTTTGGTAAGAAGGCCTTCAC 490
|||||||||||||||||| ||||| ||| | | || | ||||| |||||||| |||||
Sbjct 506 CAATGTGTTGAAGGTGATACCAGCTGGGTCTTCTTCTTCATTTGGAAAGAAGGCATTCAC 565
Query 491 TGGAGTGTAAG 501
|||| ||||||
Sbjct 566 TGGAATGTAAG 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24916136912
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5