BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941902

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23760.1 | Symbols:  | Copper transport protein family | chr...   547    2e-155


> AT5G23760.1 | Symbols:  | Copper transport protein family | chr5:8013085-8014228 
REVERSE LENGTH=568
Length=568

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 323/336 (96%), Gaps = 1/336 (0%)
 Strand=Plus/Plus

Query  20   AATGGCTCAGAAAGTGGTGTTGAAGGTTTTAACCATGACTGATGATAAAACCAAGCAGAA  79
            ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||
Sbjct  99   AATGGCTCAGAAAGTGGTGCTGAAGGTTTTAACCATGACTGATGATAAGACGAAGCAGAA  158

Query  80   AGCCATAGAAGCTGCAGCTGATATCTTCGGAGTTGATTCGATAGCAGCGGATATGAAGGA  139
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  159  AGCCATAGAAGCTGCAGCTGATATCTTCGGAGTTGATTCCATAGCAGCGGATATGAAGGA  218

Query  140  TCAAAAATTGACGGTGATCGGTTTGATGGATGCGGTTGCGGTGGTAAAGAAGTTGAAGAA  199
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  219  TCAAAAATTGACGGTGATCGGTTTGATGGATGCGGTTGCGGTGGTGAAGAAGTTGAAGAA  278

Query  200  GGTTGGTAAAGTCGATTTGATATCGGTTGGACCGGCgaaagaggagaagaaagaagagaa  259
            |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  279  GGTTGGTAAAGTCGATTTGATATCGGTTGGACCGGCAAAAGAAGAGAAGAAAGAAGAGAA  338

Query  260  gaaggaagagaagaaagaggaaaagaaagaggagaagaaagaagagaagaaggaagaaga  319
            ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct  339  GAAGGAAGAGAAGAAAGAGGAAAAGAAAGAGGAGAAGAAGGAAGAGCAGAAAGAAGAAGA  398

Query  320  acctaagaaaTAAGTAACTCGA-TTGCTATTGAAAC  354
            ||||||||||||||| |||||| |||||||| ||||
Sbjct  399  ACCTAAGAAATAAGTGACTCGAATTGCTATTAAAAC  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16588357170


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5