BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941906

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G23820.1 | Symbols:  | MD-2-related lipid recognition domain...   566    9e-161


> AT5G23820.1 | Symbols:  | MD-2-related lipid recognition domain-containing 
protein | chr5:8031268-8033020 FORWARD LENGTH=824
Length=824

 Score =  566 bits (306),  Expect = 9e-161
 Identities = 471/546 (86%), Gaps = 29/546 (5%)
 Strand=Plus/Plus

Query  4    TCTTTTCAAAGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCCATGCTTCTCCT  63
            |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct  94   TCTTTTTAAAGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCTATGCTACTCCT  153

Query  64   CCTCGCATCACTCTTCTTCTTACCGGTTTTGCATGGTGCCATCGATTTTGAATATTGCGC  123
            ||||| |||||||||||||||||||| ||||| ||| ||||| ||||| ||||| |||||
Sbjct  154  CCTCGTATCACTCTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGC  213

Query  124  CAAAAATGGAAACGATTACGGTAAC-GTTACTCGTATTGAGGTCTCTCCGTC-GATTGG-  180
            ||||||||||||||||||||| ||| || ||| | |||| ||||||||| || | |||| 
Sbjct  214  CAAAAATGGAAACGATTACGG-AACCGTCACTAGCATTGTGGTCTCTCCATCTG-TTGGG  271

Query  181  CTTTAGCGAAAACCCATAC-ATCACTATAAATTTATTCGGTTCTGCAAGCAAAAACATTT  239
            | | | |||||||||| || ||||||||||||||||||||||||||||||||||||||  
Sbjct  272  CCTCA-CGAAAACCCA-ACCATCACTATAAATTTATTCGGTTCTGCAAGCAAAAACATCC  329

Query  240  TCC-CGGGAACCCTTGTGTACGT-GACTTATAGATCTGGGGATTTTATTGGCTTTTTAAG  297
             || ||||||||||||||||||| | ||| ||||  |||||| ||||  ||| |||||| 
Sbjct  330  -CCGCGGGAACCCTTGTGTACGTAGCCTT-TAGAGATGGGGAATTTACCGGCCTTTTAAA  387

Query  298  AACTTACAACCTCTGTGATGTGACTGCATGTAACACTGAATCTGTGATTGAAGCTGGCAC  357
            |||||||||||| |||||||||| ||||||||||| |||| ||| |||||||||||||||
Sbjct  388  AACTTACAACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGCAC  447

Query  358  CAACTTTGAGATAACTCTTCCCGAAGTTCTTTATGTT----A--A-G-G-AAATCACGTA  408
            |||||||||| |||||||| |||| ||||||||||||    |  | | | |||||| |||
Sbjct  448  CAACTTTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGAAATCAAGTA  507

Query  409  TTCGGTATCTTTGCGC-GAAAGAACCT-ATC--AGGA---TCCAATAATAAAAATGTGTG  461
             ||||||||||||||| |||||| ||| |    ||||   ||||||||||||||||||||
Sbjct  508  CTCGGTATCTTTGCGCCGAAAGA-CCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTG  566

Query  462  TGGACTTCAAAGTACCTGCTTCAGCTCCTGCATTGGTCACTATTTAGTCAATTTGGCAGA  521
            | |||||||||||||||||  ||||||||||||| ||| |||||||||||| ||||| ||
Sbjct  567  TCGACTTCAAAGTACCTGCCCCAGCTCCTGCATTTGTCTCTATTTAGTCAAGTTGGCTGA  626

Query  522  TGAAAA  527
            ||||||
Sbjct  627  TGAAAA  632



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5