BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941908
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23820.1 | Symbols: | MD-2-related lipid recognition domain... 891 0.0
AT5G23840.1 | Symbols: | MD-2-related lipid recognition domain... 710 0.0
AT5G23830.1 | Symbols: | MD-2-related lipid recognition domain... 571 3e-162
> AT5G23820.1 | Symbols: | MD-2-related lipid recognition domain-containing
protein | chr5:8031268-8033020 FORWARD LENGTH=824
Length=824
Score = 891 bits (482), Expect = 0.0
Identities = 591/642 (92%), Gaps = 13/642 (2%)
Strand=Plus/Plus
Query 1 TTTCAAGGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCCATGCTTCTCATCCT 60
||| || |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 97 TTTTAAAGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCTATGCTACTCCTCCT 156
Query 61 CGCATCACTCTTCTTCTTACCCGCTTTGCATGGCGCCATCGATTTCGAATACTGCGGCAA 120
|| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||
Sbjct 157 CGTATCACTCTTCTTCTTACCGGCTTTGCGTGGCGCCATAGATTTCGAATACTGCGCCAA 216
Query 121 AAATGGAAACGATTACGGTACCGTCACTCGCATCGAGGTCTCTCCGTCTGTTGGGCCTCA 180
|||||||||||||||||| ||||||||| |||| | ||||||||| ||||||||||||||
Sbjct 217 AAATGGAAACGATTACGGAACCGTCACTAGCATTGTGGTCTCTCCATCTGTTGGGCCTCA 276
Query 181 CGGAAACCCAACCATCAATATAAATTTATTCGGTTCCGCAAGCAAAAACATCTCCC-CTG 239
|| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | |
Sbjct 277 CGAAAACCCAACCATCACTATAAATTTATTCGGTTCTGCAAGCAAAAACATC-CCCGCGG 335
Query 240 GAACCCTTGTGTACGTAGCCTTTAGATCTGGGGATTTTACTGGCCTTTTAAAAACTTACA 299
|||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 336 GAACCCTTGTGTACGTAGCCTTTAGAGATGGGGAATTTACCGGCCTTTTAAAAACTTACA 395
Query 300 ATCTTTGTGATGTGAGTACATGTAACACTGAATCTGAGATTGAAGCTGGCACCAACTTTG 359
| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 396 ACCTTTGTGATGTGAGTGCATGTAACAATGAAGCTGAGATTGAAGCTGGCACCAACTTTG 455
Query 360 AGTTAACTCTTTCCGACGTTCTTTATGTTGGTTTTGATGAGGAAATCAAGTATTCGGTAT 419
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 456 AGTTAACTCTTTCCGACGTTCTTTATGTTGGTTATGATGAGGAAATCAAGTACTCGGTAT 515
Query 420 CTTTGCGCCAAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTGTAGACTTCA 479
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 516 CTTTGCGCCGAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTGTCGACTTCA 575
Query 480 AAGTACCTGCCCCAGCTCTTGCATTTGTCTCTATGTAGTCAAGTTGGCAGATGAAAAAAT 539
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 576 AAGTACCTGCCCCAGCTCCTGCATTTGTCTCTATTTAGTCAAGTTGGCTGATGAAAAGAT 635
Query 540 GGTTCCAAGTCT-TT--GATTATATGAGTCTCTCTAGCAACTT-GCATTTCCTTTTCCCT 595
| |||||||||| || |||||||||||||||||| ||||||| || |||||||||||||
Sbjct 636 GTTTCCAAGTCTCTTTTGATTATATGAGTCTCTCTCGCAACTTTGCTTTTCCTTTTCCCT 695
Query 596 TTATATGTAATGTGTTGTCCAACAAATAAATTAAAATCTTGG 637
|| | ||| || | ||||||||||||||||||||||||||
Sbjct 696 TT-T-TGT---GT-T-GTCCAACAAATAAATTAAAATCTTGG 730
> AT5G23840.1 | Symbols: | MD-2-related lipid recognition domain-containing
protein | chr5:8035767-8036982 FORWARD LENGTH=816
Length=816
Score = 710 bits (384), Expect = 0.0
Identities = 590/683 (86%), Gaps = 40/683 (6%)
Strand=Plus/Plus
Query 4 CAAGGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCCATGCTTCTCATCCTCGC 63
|||| ||||||||||| ||||||||||||||||| ||||||| ||||| || |||| ||
Sbjct 89 CAAGAAGCTTTGAAGAACCATGGCGATGTCTCATATCCAGCCTGTGCTTTTCTTCCTTGC 148
Query 64 ATCACTCTTCTTCTTACCCGC-TT-TGCATGGCGCCATCGATTTCGAATACTGCGGC-AA 120
||| |||||||||||||| || || |||| ||||||||||||| ||||| ||| | ||
Sbjct 149 ATCTCTCTTCTTCTTACCGGCTTTGTGCA--GCGCCATCGATTTTGAATATTGC-ACTAA 205
Query 121 AAATGGAAACGATTACGGTACCGTCACTC-GCATC-GAGGTCTCTCCGTCTGTTGGGCCT 178
||||||| |||||||||||| | || ||| | ||| | ||||||||| |||| |||||||
Sbjct 206 AAATGGACACGATTACGGTAGCATCTCTCAG-ATCTG-GGTCTCTCCCTCTGATGGGCCT 263
Query 179 CACGG-AAACCCAACCATCAATATAAATTTATTCGGTTCCGCAAGCAAAAACATCTCCCC 237
|| || |||||||||||||| |||| ||||||||||||| ||||||||| |||| ||| |
Sbjct 264 CA-GGAAAACCCAACCATCACTATACATTTATTCGGTTCTGCAAGCAAAGACATATCCGC 322
Query 238 TGGAACCCTTGTGTACG-TAGCCTTTAGATCTGGGGATTTTACTGGCCTTTTAAAAACTT 296
|||||||||||||| | || ||| |||||||||||||||||| ||||||||||||||||
Sbjct 323 AGGAACCCTTGTGTATGTTA-CCTATAGATCTGGGGATTTTACAGGCCTTTTAAAAACTT 381
Query 297 ACAATCTTTGTGATGTGAGTACATGTAACACTGAATCTGAGATTGAAGCTGGCACCAACT 356
|| | || |||||||||||| |||||||| |||||| || |||||||||||||||| |||
Sbjct 382 ACGACCTATGTGATGTGAGTGCATGTAACCCTGAATATGTGATTGAAGCTGGCACCGACT 441
Query 357 TTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTTTGATGAGGAAATCAAGTATTCGG 416
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TTGAGTTGACTCTTTCCGACGTTCTTTATGTTGGTTTTGATGAGGAAATCAAGTATTCGG 501
Query 417 TATCTTTGCGCCAAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTGTAGACT 476
||||||||||| ||||||||| ||||||| || |||||||||||||||||||||| ||||
Sbjct 502 TATCTTTGCGCGAAAAGACCTCAGAGGAGAAGAATCCAATAATAAAAATGTGTGTCGACT 561
Query 477 TCAAAGTACCTGC-CCCAGCT---C-T--T---GCATTTGTCTCTATGTAGTCAAGTTGG 526
||||||||||| | ||||||| | | | ||||| ||||||||||||||||||||
Sbjct 562 TCAAAGTACCT-CACCCAGCTTTTCCTCCTCCTGCATTGGTCTCTATGTAGTCAAGTTGA 620
Query 527 CAGATGAAAAAATGGTTCCAAGTCTTTGATTATATGAGTCTCTCTAGCAACTTGCATTTC 586
|||||||||| ||| ||||||||||||||||||||||||||| | | ||||||||||
Sbjct 621 CAGATGAAAAGATGTTTCCAAGTCTTTGATTATATGAGTCTC---A--A-CTTGCATTTC 674
Query 587 CTTTT--CCCTTTATATGTAATGTGTTGTCCAACAAATAAATTAAAATCTTGGCTTGGTT 644
||||| |||||| ||| | ||| | ||| ||||||||||||||| ||||||||||||
Sbjct 675 CTTTTGTCCCTTTTTAT--A-TGT-TC-TCCGACAAATAAATTAAAACCTTGGCTTGGTT 729
Query 645 -AGTATGAATCAGCATGTCTTTT 666
| |||||| || ||||||||||
Sbjct 730 GA-TATGAACCACCATGTCTTTT 751
> AT5G23830.1 | Symbols: | MD-2-related lipid recognition domain-containing
protein | chr5:8033738-8034930 FORWARD LENGTH=777
Length=777
Score = 571 bits (309), Expect = 3e-162
Identities = 533/637 (84%), Gaps = 32/637 (5%)
Strand=Plus/Plus
Query 4 CAAGGAGCTTTGAAGATCCATGGCGATGTCTCATGTCCAGCCCATGCTTCTCATCCTCGC 63
|||| ||||||||||| ||||||||||||||||||||||||| ||||| || |||||||
Sbjct 46 CAAGAAGCTTTGAAGAACCATGGCGATGTCTCATGTCCAGCCTGTGCTTTTCTTCCTCGC 105
Query 64 ATCACTCTTCTTCTTACCCGC-TT-TGCATGGCGCCATCGATTTCGAATACTGCGGCAAA 121
||||||||||||||||| || || |||| |||||| |||||| ||||| ||| ||||
Sbjct 106 ATCACTCTTCTTCTTACTGGCTTTGTGCA--GCGCCAACGATTTTGAATATTGCACCAAA 163
Query 122 AATGGAAACGATTACGGTACCGTCACTCGCATCGAGGTCTCTCCGTCTGTTGGGCCTCAC 181
|||||| | ||||| ||| |||| || | |||||||||| | || |||||||||||
Sbjct 164 AATGGACATGATTATGGTGTCGTCTCTTGGATCGAGGTCT-TTCG--GGTTGGGCCTCA- 219
Query 182 GG-AAACCCAACCATCAATATAAATTTATTCGGTTCCGC-AAGCAAA-AACATCTCCCCT 238
|| |||||||||| ||| ||||||| |||| ||| | || | | ||| || || ||| |
Sbjct 220 GGAAAACCCAACCCTCACTATAAATGTATTTGGTACTGCGACG-AAAGAA-ATATCCGCG 277
Query 239 GGAACCCTTGTGTACGTAGCCTTTAGATCTGGGGATTTTACTGGCCTTTTAAAAACTTAC 298
||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 278 GGAACCCTTGTATATGTAGCCTATAGATCTGGGGATTTTACAGGCCTTTTAAAAACTTAC 337
Query 299 AATCTTTGTGATGTGAG--T-ACATGTAACACTGAATCTGAGATTGAAGCTGGC-ACCAA 354
| || ||||||||||| | ||||||||| ||| |||||||||||||||||| | |
Sbjct 338 GACCTATGTGATGTGAGTTTGGCATGTAACATTGATTCTGAGATTGAAGCTGGCGA-CGT 396
Query 355 CTTTGAGTTAACTCTTTCCGACGTTCTTTATGTTGGTTTTGATGAGGAAATCAAGTATTC 414
||||| || | |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 397 GTTTGACTTCAGTCTTAAAGACGTTCTTTATGTTGGTTTTGATGAGGGAATCAAGTATTC 456
Query 415 GGTATCTTTGCGCCAAAAGACCTTAGAGGAGGAGGATCCAATAATAAAAATGTGTGTAGA 474
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| | ||
Sbjct 457 CGTATCTTTGCGTCAAAAAACCGCAGAGGAGGAGGATCCAATAATAAAAATGTGTATCGA 516
Query 475 CTTCAAAGTACCTGCCCCAGCT-CTTGCATTTGTCTCTATGTAGTCAAGTTGGCAGATGA 533
|||||||||||||||| ||||| || |||||||||||||| |||||| |||||| |||||
Sbjct 517 CTTCAAAGTACCTGCCTCAGCTTCT-GCATTTGTCTCTATTTAGTCACGTTGGCTGATGA 575
Query 534 AAAAATGGTTCCAAGTCTTTGATTATATGAGTCTCTCTAGCAACTTGCATTTCCTTTTCC 593
||| ||| |||||| ||||| ||||||||| ||| ||| || |||||||| || ||
Sbjct 576 AAAGATGTTTCCAACTCTTTCATTATATGACTCTTTCTCGC---TTGCATTT--TT--CC 628
Query 594 CTTTATATGTAATGTGTTGTCCAACAAATAAATTAAA 630
||| | | || ||||||||||||||||||||| |||
Sbjct 629 -TTT-T-T-TA-TGTGTTGTCCAACAAATAAATCAAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32200088227
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5