BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941909
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23850.1 | Symbols: | Arabidopsis thaliana protein of unkno... 2436 0.0
AT3G48980.1 | Symbols: | Arabidopsis thaliana protein of unkno... 1022 0.0
> AT5G23850.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr5:8038052-8040938 FORWARD LENGTH=1900
Length=1900
Score = 2436 bits (1319), Expect = 0.0
Identities = 1564/1682 (93%), Gaps = 18/1682 (1%)
Strand=Plus/Plus
Query 1 CTTCTCCATCAGGAACAATCCGATGAGAAACTCGCCGTCCAAGAACGGGTCGGCGGGAGG 60
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 CTTCTCCATCAGGAAGATTCCGATGAGAAACTCGCCGTCCAAGAACGGGTCGGCGGGAGG 112
Query 61 GCATTCTCGTACTTTCAT-C-GACACTATCTGGTCTCCCTTTGTCAAGTCCGGTTTCGGA 118
|||||||||||| || || | ||||| ||||||||||||||||||||||| ||||| |||
Sbjct 113 GCATTCTCGTAC-TT-ATACAGACACAATCTGGTCTCCCTTTGTCAAGTCAGGTTTGGGA 170
Query 119 ATATCTTCCAACAGATCCTATGCCCTAGTCTCCCTCTTCATCCTCCTCATAGTCGGCGCG 178
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 171 ATATCTCCCAACAGATCCTACGCCCTAGTCTCCCTCCTCATCCTCCTCATAGTCGGCGCT 230
Query 179 TTTATCTCCACGCGCCTTCTCCTCGATACCACCACCGTTCTGATAGAGAAAGAAGCCGCG 238
||||||||||||||||| ||||||| | ||||||||||||| |||||||| ||||||||
Sbjct 231 TTTATCTCCACGCGCCTCCTCCTCG--A-CACCACCGTTCTGCTAGAGAAAAAAGCCGCG 287
Query 239 ACGACGACGA-G--TAAAACCCAAACCCAGACGATATCCCCAAAATACCCTCGACCAACC 295
|||||||||| | |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 288 ACGACGACGACGACTAAAACCCAAACTCAGACGATAACCCCAAAATACCCTCGACCAACC 347
Query 296 ACGGCAATTACACAAAGCCCTACACCCGAGTTCACACTACACTGCTCCGCCAACGAAACC 355
|||| |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 348 ACGGTAATTACTCAAAGCCCTAAACCGGAGTTCACACTACACTGCTCCGCCAACGAAACC 407
Query 356 ACCGCGTCATGTCCGAGTAACAAATACCCGACGACGGCGAGCTTCCGAGAAGATGACGAT 415
||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||
Sbjct 408 ACCGCGTCATGTCCGAGTAACAAATACCCGACGACAACGAGCTT-C--GAAGATGATGAT 464
Query 416 ACAAACCATCCTCCAAACGCCACGTGTCCTGATTACTTCCGTTGGATCCACGAGGATCTC 475
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 465 ACAAACCATCCTCCGACCGCCACGTGTCCTGATTACTTCCGTTGGATTCACGAGGATCTC 524
Query 476 CGTCCATGGTCGAGTACGGGAATCACGAGGGAAGCATTGGAGCGAGCCAAAAAGACGGCG 535
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 525 CGTCCATGGTCGAGGACGGGAATCACGAGGGAAGCATTGGAGCGAGCTAAAAAGACGGCG 584
Query 536 AATTTCCGGCTAGCGATCATCGACGGGAAAATTTACGTAGAGAAGTTTCAAGATGCGTTT 595
| |||||||||||||||| ||| ||||||||||||||| ||||| ||||||||||| |||
Sbjct 585 ACTTTCCGGCTAGCGATCGTCGGCGGGAAAATTTACGTCGAGAAATTTCAAGATGCATTT 644
Query 596 CAGACGAGAGACGTGTTCACCATTTGGGGATTCTTACAGCTTTTAAGAAAATACCCTGGG 655
||||| |||||||||||||| || ||||| ||||||||||||||| | || |||||||||
Sbjct 645 CAGACAAGAGACGTGTTCACAATCTGGGGTTTCTTACAGCTTTTACGGAAGTACCCTGGG 704
Query 656 AAGATTCCAGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTCGTTAAAGCTTCA 715
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 705 AAGATTCCAGATCTCGAGCTTATGTTTGACTGCGTTGACTGGCCGGTCGTTAGAGCTACG 764
Query 716 GAATTCGCCGGAGCTAATGCGCCGTCGCCTCCGCCGCTGTTTCGGTACTGCGGGAATGAG 775
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 765 GAATTCGCCGGAGCTAACGCGCCGTCGCCTCCGCCGCTGTTTCGTTACTGTGGGAATGAG 824
Query 776 GAGACGCTTGATATCGTGTTTCCTGATTGGTCCTTTTGGGGATGGGCGGAGGTGAATATA 835
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 825 GAGACGCTTGATATCGTGTTTCCTGATTGGTCCTTCTGGGGATGGGCGGAGGTGAATATA 884
Query 836 AAGCCATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATCAGAGGACTAAATGGATA 895
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 885 AAGCCATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATGAGAGGACTAAATGGATT 944
Query 896 AACAGAGAGCCTTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGACACGACAAGAT 955
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AACAGAGAGCCGTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGACACGACAAGAT 1004
Query 956 CTTATGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTATATGTTCAGGAT 1015
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1005 CTTATGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTGTATGCTCAGGAT 1064
Query 1016 TGGATCAAAGAATCAAAGGAAGGCTACAAGCAATCAGATTTGGCAAGCCAATGCCATCAC 1075
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1065 TGGATCAAAGAATCAAAGGAAGGTTACAAGCAATCAGACTTGGCAAGCCAATGCCATCAC 1124
Query 1076 AGGTACAAGATATATATAGAAGGGTCTGCATGGTCAGTGAGCGAGAAGTACATTTTGGCG 1135
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1125 AGATACAAGATATATATAGAAGGGTCTGCATGGTCCGTTAGCGAGAAGTACATTTTGGCG 1184
Query 1136 TGTGACTCTGTGAGTCTGTTGGTGAAACCTCATTACTATGATTTCTTCACCCGAGGCTTG 1195
||||||||||||| |||| | |||||||||||||||||||||||||| || |||| |||
Sbjct 1185 TGTGACTCTGTGACTCTGCTAGTGAAACCTCATTACTATGATTTCTTTACTAGAGGTTTG 1244
Query 1196 CTTCCGGCTCACCATTATTGGCCCGTTAGGGAGCACGATAAGTGTCGCTCTATCAAATTT 1255
||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1245 CTTCCAGCTCACCATTATTGGCCCGTTAGAGAGCACGATAAGTGCCGCTCCATCAAATTC 1304
Query 1256 GCTGTTGATTGGGGAAACTCTCACATTCAAAAGGCACAGGATATTGGAAAGGCGGCGAGC 1315
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1305 GCCGTTGATTGGGGTAACTCTCACATTCAAAAGGCACAGGATATTGGAAAGGCGGCCAGC 1364
Query 1316 GATTTCATCCAACAAGAACTCAAGATGGACTACGTGTATGATTACATGTACCATCTTTTA 1375
||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1365 GATTTTATCCAACAAGACCTCAAGATGGACTATGTGTATGACTACATGTACCATCTTTTA 1424
Query 1376 ACCGAATACTCTAAACTCCTCCGGTTTAAACCTGAGATTCCTCAGAATGCCGTGGAGATT 1435
||||||||||| |||||||||| ||||||||| |||||||| | ||||||||||||||||
Sbjct 1425 ACCGAATACTCGAAACTCCTCCAGTTTAAACCCGAGATTCCGCGGAATGCCGTGGAGATT 1484
Query 1436 TGTTCGGAAACAATGGCGTGTCCGAGAAGCGGGAATGAGCGGAAGTTCATGACGGAATCA 1495
|| |||||||||||||| |||| ||| || ||||||||||||||||||||||| ||||||
Sbjct 1485 TGCTCGGAAACAATGGCATGTCTGAGGAGTGGGAATGAGCGGAAGTTCATGACAGAATCA 1544
Query 1496 TTTGTAAAGCACCCTGCGGAGTCTGGTCCGTGTGCCATGCCGCCTCCGTATAATCCGGC- 1554
| || ||||| |||||||| |||||||||||||||||||| ||||| ||| |||||||
Sbjct 1545 CTCGTGAAGCAACCTGCGGATTCTGGTCCGTGTGCCATGCCTCCTCCTTATGATCCGGCT 1604
Query 1555 ATC-TCTTTATGGGGTTGTGAAGAGGAAACAGAGTACTAATATGAGAATCCTACAGTGGG 1613
| | | || | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 A-CGTATT-ACGAGGTTGTGAAGAGGAAACAGAGTACTAATATGAGAATCCTACAGTGGG 1662
Query 1614 AGATGAAGTACTGGAGCAAGCAGAATCAAACCGGCTCTTGAATTCTTTCATCTTCATTTC 1673
| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1663 AAATGAAGTACTGGAGTAAGCAGAATCAAACCGGCTCTTGAATT-TTTCATCTTCATTTC 1721
Query 1674 GG 1675
||
Sbjct 1722 GG 1723
> AT3G48980.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:18155416-18158417 FORWARD LENGTH=1815
Length=1815
Score = 1022 bits (553), Expect = 0.0
Identities = 1018/1241 (82%), Gaps = 38/1241 (3%)
Strand=Plus/Plus
Query 426 CTCCAAACGCCACGTGTCCTGATTACTTCCGTTGGATCCACGAGGATCTCCGTCCATGGT 485
||||| ||||||||| || ||||||||||| ||||| ||||||||||| || ||||||
Sbjct 392 CTCCATCCGCCACGTGCCCAGATTACTTCCGATGGATTCACGAGGATCTACGGCCATGGG 451
Query 486 CG-AGTA-CGGGAATCACGAGGGAAGCATTGGAGCGAGCCAAAAAGACGGCGAATTTCCG 543
| || | |||| |||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 452 AGAAG-ACCGGG-ATCACGAGGGAAGCCTTGGAGCGAGCCAATGCGACGGCGATTTTCCG 509
Query 544 GCTAGCGATCATCGACGGGAAAATTTACGTAGAGAAGTTTCAAGATGCGTTTCAGACGAG 603
|| ||||| ||| |||||| ||| ||||| ||||| |||| || || |||||||| ||
Sbjct 510 CCTGGCGATTATCAACGGGAGAATCTACGTCGAGAAATTTCGTGAGGCTTTTCAGACAAG 569
Query 604 AGACGTGTTCACCATTTGGGGATTCTTACAGCTTTTAAGAAAATACCCTGGG-AAGATTC 662
||| |||||||| || ||||||||| ||||||| || | | ||| || ||| |||||||
Sbjct 570 AGATGTGTTCACGATCTGGGGATTCGTACAGCTCCTACGGAGATATCC-GGGAAAGATTC 628
Query 663 CAGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTCGTTAAAGCTTCAGAATTCG 722
| |||||||||||||||||||||||||||||||||||||| || || || | |||||||
Sbjct 629 CGGATCTCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTAGTGAAGGCGGCTGAATTCG 688
Query 723 CCGGAGCTAATGCG-CCGTCG-CCTCCGCCGCTGTTTCGGTACTGCGGGAATGAGGAGAC 780
|||||| | || | || || || ||||| |||| || || |||| ||| || |||||
Sbjct 689 CCGGAGTTGAT-CAACC-TCCACCGCCGCCATTGTTCCGTTATTGCGCGAACGACGAGAC 746
Query 781 GCTTGATATCGTGTTTCCTGATTGGTCCTTTTGGGGATGGGCGGAGGTGAATATAAAGCC 840
||| || || || ||||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct 747 GCTCGACATTGTATTTCCCGATTGGTCCTATTGGGGATGGGCTGAGGTGAATATAAAGCC 806
Query 841 ATGGGAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATCAGAGGACTAAATGGATAAACAG 900
|||||| ||| ||||||| |||||||||||||| || |||||||||||||||||| | ||
Sbjct 807 ATGGGAAAGTCTGTTGAAAGAACTAAGAGAAGGAAACCAGAGGACTAAATGGATAGATAG 866
Query 901 AGAGCCTTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGAC-ACGACAAGATCTTA 959
||||||||||||||| |||||||| ||||||| ||| || ||||| | ||| ||||| |
Sbjct 867 AGAGCCTTATGCTTACTGGAAAGGGAATCCAACGGTTGCTGAGACGA-GACTTGATCTCA 925
Query 960 TGAAATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTATATGTTCAGGATTGGA 1019
||||||||||| |||| |||| | || ||||| |||||||| || ||||| |||
Sbjct 926 TGAAATGTAATCTCTCCGAGGTGTATGACTGGAAAGCTCGTTTGTACAAGCAGGACTGGG 985
Query 1020 TCAAAGAATCAAAGGAAGGCTACAAGCAATCAGATTTGGCAAGCCAATGCCATCACAGGT 1079
|||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||||||||
Sbjct 986 TCAAGGAATCAAAGGAAGGTTACAAGCAGTCAGACTTGGCGAGCCAATGCCATCACAGGT 1045
Query 1080 ACAAGATATATATAGAAGGGTCTGCATGGTCAGTGAGCGAGAAGTACATTTTGGCGTGTG 1139
||||||| || |||||||||||||| ||||| ||||| |||||||||||| |||| ||||
Sbjct 1046 ACAAGATTTACATAGAAGGGTCTGCGTGGTCGGTGAGTGAGAAGTACATTCTGGCTTGTG 1105
Query 1140 ACTCTGTGAG-TCTGTTGGTGAAACCTCATTACTATGATTTCTTCACCCGAGGCT-TGCT 1197
|||| |||| | | ||||||||||||||||||| ||||||||||| |||| | || |
Sbjct 1106 ACTCGGTGACAT-TAATGGTGAAACCTCATTACTACGATTTCTTCACAAGAGG-TATGTT 1163
Query 1198 TCC-GGCTCACCATTATTGGCCCGTTAGGGAGCACGATAAGTGTCGCTCTATCAAATTTG 1256
||| || ||||||||| ||||| || | |||| |||| || || || || |||||||| |
Sbjct 1164 TCCAGG-TCACCATTACTGGCCTGTCAAGGAGGACGACAAATGCCGTTCCATCAAATTCG 1222
Query 1257 CTGTTGATTGGGGAAACTCT-CACATTCAAAAGGCACAGGATATTGGAAAGGCGGCGAGC 1315
||||||||||||| |||| | || || | ||||||||| || || || ||| ||| ||
Sbjct 1223 CTGTTGATTGGGGCAACT-TGCATATGCGAAAGGCACAAGACATAGGTAAGAAGGCAAGT 1281
Query 1316 GA-TTTCATCCAACAAGAACTCAAGATGGACTACGTGTATGATTACATGTACCATCTTTT 1374
|| ||| | ||||||||||||||||||||||| ||||| |||||||||| ||||| ||
Sbjct 1282 GAGTTTG-TGCAACAAGAACTCAAGATGGACTATGTGTACGATTACATGTTTCATCTCTT 1340
Query 1375 AA-CCGAATACTCTAAACTCCTCCGGTTTAAACCTGAGATTCCTCAGAA-TGC-CGTGGA 1431
|| || |||||||||||||||||||||||||||| ||||| |||||||| | | | || |
Sbjct 1341 AATCC-AATACTCTAAACTCCTCCGGTTTAAACCCGAGATCCCTCAGAACTCCAC-TG-A 1397
Query 1432 GATTTGTTCGGAAACAATGGCGTGTCCGAGAAGCGGGAA-TGAGCGGAAGTTCATGACGG 1490
| | || || || ||||||| || ||||| | |||| ||| || ||||| |||| ||
Sbjct 1398 GCTCTGCTCAGAGGCAATGGCATGCCCGAGG-GATGGAAATGAACGAAAGTTTATGATGG 1456
Query 1491 AATCATTTGTAAAGCACCCTGCGGAGTCTGGTCCGTGTGCCATGCCGCCTCCGTATAATC 1550
||||| | ||||| | ||| || ||| | ||||| || |||||||||||||||||| |||
Sbjct 1457 AATCACTCGTAAAACGCCCAGCTGAGACAGGTCCCTGCGCCATGCCGCCTCCGTATGATC 1516
Query 1551 CGGCATC-TCTTTATGGGGTTGTGAAGAGGAAACAGAGTACTAATA-TGAGAATCCTACA 1608
||||||| | ||||| ||| |||| |||| ||||||||| | || | |||||| |||
Sbjct 1517 CGGCATCAT-TTTATTCAGTTTTGAAAAGGAGACAGAGTACGACTAGT-AGAATCGAACA 1574
Query 1609 GTGGGAGA-TGAAGTACTGGAGCAAGCAGAATCAA-ACCGG 1647
|||||||| | ||||||||||| |||||||| ||| |||||
Sbjct 1575 GTGGGAGAGT-AAGTACTGGAGGAAGCAGAA-CAAGACCGG 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5