BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941911
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | clea... 1177 0.0
AT1G02290.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 508 5e-143
> AT5G23880.1 | Symbols: EMB1265, CPSF100, ESP5, ATCPSF100 | cleavage
and polyadenylation specificity factor 100 | chr5:8052504-8058354
FORWARD LENGTH=2473
Length=2473
Score = 1177 bits (637), Expect = 0.0
Identities = 684/706 (97%), Gaps = 6/706 (1%)
Strand=Plus/Plus
Query 1 TTGGTGCTTTTCCTTATGCTATGAAGCAGCTTGGACTCTCTGCTCCTGTTTATGCTACTG 60
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 249 TTGGTGCTCTTCCTTATGCTATGAAGCAGCTTGGACTCTCCGCTCCTGTTTATGCTACTG 308
Query 61 AGCCTGTTCATAGATTAGGTCTCCTTACAATGTATGATCAGTTTTTATCCAGAAAGCAAG 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 309 AGCCTGTTCATAGATTAGGTCTCCTTACAATGTATGATCAGTTTTTGTCCAGGAAGCAAG 368
Query 121 TATCCGACTTTGATTTGTTTACACTGGATGACATTGATTCTGCTTTCCAGAATGTGATCA 180
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 369 TATCCGACTTTGATCTGTTTACACTGGATGACATAGATTCTGCTTTCCAGAATGTGATCA 428
Query 181 GATTGACTTACTCTCAAAATTACCATCTTTCT-----GGGAGA-GGTATTGTAATTGCTC 234
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 429 GATTGACTTACTCTCAAAATTACCATCTTTCTGGAAAGGGAGAGGGTATTGTAATTGCTC 488
Query 235 CTCATGTTGCTGGACATATGCTGGGAGGTAGCATCTGGAGGATAACAAAGGATGGGGAGG 294
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CTCATGTTGCTGGACACATGCTGGGAGGTAGCATCTGGAGGATAACAAAGGATGGGGAGG 548
Query 295 ATGTTATATATGCTGTTGACTACAATCATCGGAAAGAAAGGCATTTAAATGGAACTGTTT 354
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 549 ATGTTATATATGCTGTTGACTACAATCATCGGAAAGAAAGGCATTTGAATGGAACTGTTT 608
Query 355 TACAGTCTTTTGTTCGGCCTGCTGTTCTGATAACCGATGCATATCATGCTCTTTATACCA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TACAGTCTTTTGTTCGGCCTGCTGTTCTGATAACCGATGCATATCATGCTCTTTATACCA 668
Query 415 ATCAAACCGCAAGACAGCAAAGGGACAAAGAATTTCTAGATACCATTTCAAAACATCTTG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATCAAACCGCAAGACAGCAAAGGGACAAAGAATTTCTAGATACCATTTCAAAACATCTTG 728
Query 475 AAGTTGGGGGAAATGTTCTATTACCCGTGGATACTGCGGGTCGAGTCCTGGAACTTCTCT 534
||||||| |||||||||||||| || || || ||||||||||| ||||||||||||||||
Sbjct 729 AAGTTGGAGGAAATGTTCTATTGCCAGTAGACACTGCGGGTCGTGTCCTGGAACTTCTCT 788
Query 535 TGATACTTGAACAGCATTGGTCACAAAGAGGTTTCAGCTTTCCCATTTACTTTCTCACAT 594
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 789 TGATACTTGAACAGCATTGGTCACAAAGAGGTTTCAGCTTTCCCATTTATTTTCTCACGT 848
Query 595 ACGTGTCATCTAGCACAATTGACTATGTTAAGAGTTTCCTCGAGTGGATGAGTGACTCCA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ACGTGTCATCTAGCACAATTGACTATGTTAAGAGTTTCCTCGAGTGGATGAGTGACTCCA 908
Query 655 TTTCAAAGTCCTTTGAGACTTCACGTGATAATGCCTTTCTATTGAG 700
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTTCAAAGTCCTTTGAGACTTCACGTGATAATGCCTTTCTATTGAG 954
Score = 1009 bits (546), Expect = 0.0
Identities = 588/609 (97%), Gaps = 0/609 (0%)
Strand=Plus/Plus
Query 699 AGTCTCGAAGCAGGTTTTGCTCGGGAGATATTCGTGGAGTGGGCAAATGATCCCAGAAAT 758
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1034 AGTCTCGAAGCCGGTTTTGCTCGAGAGATATTCGTGGAGTGGGCAAATGATCCCAGAAAT 1093
Query 759 TTAGTCCTCTTTACTGAAACAGGGCAGTTTGGCACTTTAGCTCGCATGCTTCAGTCAGCC 818
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1094 TTAGTCCTCTTTACTGAAACAGGCCAGTTTGGCACTTTAGCTCGTATGCTTCAGTCAGCC 1153
Query 819 CCACCTCCCAAATTTGTTAAAGTCACCATGTCAAAGAGGGTTCCTTTGGCTGGGGAAGAG 878
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1154 CCACCTCCAAAATTTGTTAAAGTCACCATGTCTAAGAGGGTTCCTTTGGCTGGGGAAGAG 1213
Query 879 TTGATTGCGTATGAAGAAGAGCAAAACAGACTGAAAAGGGAAGAAGCTTTGCGAGCTAGC 938
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TTAATTGCATATGAGGAAGAGCAAAACAGACTGAAAAGGGAAGAAGCTTTGCGAGCTAGC 1273
Query 939 CTCGTCAAAGAGGTGGAAACAAAAGCTTCCCATGGATCCGATGATAATTCAAGTGAACCT 998
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CTCGTTAAAGAGGAGGAAACAAAAGCTTCCCATGGATCCGATGATAATTCAAGTGAACCT 1333
Query 999 ATGGTCATAGATACCAAGACTACTCACGATGTTGTTGGTTCTCACGGGCCTGCATATAAA 1058
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1334 ATGATCATAGATACCAAGACTACTCACGATGTTATTGGTTCTCACGGGCCTGCATATAAA 1393
Query 1059 GATATATTGATTGATGGATTTGTTCCCCCATCTAGCAGCGTAGCTCCAATGTTCCCATTT 1118
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1394 GATATATTGATTGATGGATTTGTTCCCCCATCCAGCAGCGTAGCTCCAATGTTCCCATAT 1453
Query 1119 TATGACAACACATCTGAATGGGACGACTTTGGGGAGGTTATCAATCCAGATGATTACGTG 1178
||||| |||||||||||||||||||||||||||||| |||| ||||||||||| || |||
Sbjct 1454 TATGATAACACATCTGAATGGGACGACTTTGGGGAGATTATTAATCCAGATGACTATGTG 1513
Query 1179 ATCAAGGATGAAGACATGGACCGAGGAGCAATGCATAACGGAGGTGATGTGGACGGAAGG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 ATCAAGGATGAAGACATGGACCGAGGAGCAATGCATAACGGAGGTGATGTGGACGGAAGG 1573
Query 1239 CTTGATGAGGCAACTGCTAGTCTCATGCTTGATACAAGACCTTCGAAAGTCATTTCCAAT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1574 CTTGATGAGGCAACTGCTAGTCTCATGCTTGATACAAGACCTTCGAAAGTCATGTCCAAT 1633
Query 1299 GAGCTCATT 1307
|||||||||
Sbjct 1634 GAGCTCATT 1642
> AT1G02290.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G45830.1);
Has 134 Blast hits to 134 proteins in 37 species: Archae -
0; Bacteria - 0; Metazoa - 54; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:450527-452737
REVERSE LENGTH=1695
Length=1695
Score = 508 bits (275), Expect = 5e-143
Identities = 338/369 (92%), Gaps = 1/369 (0%)
Strand=Plus/Plus
Query 1308 AGGATAGGTTTTACAAGACATTTGAGAGGAGGATTGTTTACTCCAAAGGTAGCTTGTTTC 1367
|||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 543 AGGATAAGTTTTACAAGA-ATTTGCTAGGTGGATTGTTTACTCCAAAGGTAGCTTGTTTC 601
Query 1368 AAAGAAGGTGTTATGTTTGTTAAGAGGAAAAAGTATTACTACTCTTTAAAGTTCTATCAT 1427
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 602 AAAGAAGGTGTTATGTTTGTCAAGAGGAGAAAGTATTACTACTCTTTAAAGTTCTATCAT 661
Query 1428 GAAAAGCTGATCAAGACATTCACCGAGATGCAGAGGTTGCGGGTTCTGTATGGAAAGAAA 1487
||||||||||||| |||||| ||||| ||||| ||| || |||||| ||||||||| |||
Sbjct 662 GAAAAGCTGATCAGGACATTTACCGAAATGCAAAGGGTGTGGGTTCAGTATGGAAATAAA 721
Query 1488 TTGGGCAATAACTCAAGACTCCTCCTTTGGTCAGAACAAACACAAACCGGGAATCTAAAG 1547
||||||||| ||||||| |||||| ||||||||| || ||| |||||||| ||||| |||
Sbjct 722 TTGGGCAATTACTCAAGGCTCCTCATTTGGTCAGGACGAACTCAAACCGGTAATCTCAAG 781
Query 1548 CTGCTAGACCTTAATAGAGTTCCATCTGAGGAAATGGATAGTGCTACATGTAGATTCAAA 1607
|| || ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 CTACTGGACCTCAATAGAGTTCCATCTAAGGAAATGGATAGTGCTACATGTAGATTCAAA 841
Query 1608 ACTCCCAATGTAGTGAAACCTGTGGAAAGAAATAGAAGGAAAAGTTAAACCTTCCCTCGC 1667
|||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct 842 ACTCCCAATGTAGTGAAACCCGTGGAAAGAAATAGATCGAAAAGTTTAACCTTCCCTCGC 901
Query 1668 AGTGGCAGC 1676
|||||||||
Sbjct 902 AGTGGCAGC 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82830899250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5