BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941925
Length=763
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23950.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 608 2e-173
> AT5G23950.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr5:8082744-8083604 FORWARD LENGTH=861
Length=861
Score = 608 bits (329), Expect = 2e-173
Identities = 402/437 (92%), Gaps = 5/437 (1%)
Strand=Plus/Plus
Query 1 TTTCCAATTATACCCTCAAGAAAATGTCGTCTCGTGGCCGAGAAGTGGAGGTGACCATCT 60
||||||| |||||||||||| ||||||| || | ||||||||||| |||||||||||||
Sbjct 24 TTTCCAA-TATACCCTCAAGGAAATGTCATCCCACGGCCGAGAAGTAGAGGTGACCATCT 82
Query 61 CATCGGCGAAGGATATCAAGAACGTGAACTGGCGCAACGGCCCAAACAAGCCATACGCCG 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 CATCGGCAAAGGATATCAAGAACGTGAACTGGCGCAACGGCCCAAACAAGCCATACGCCG 142
Query 121 TTGTATGGGTTGATCCGACA-TACAAATCCTCCACAAGAGTTGAAGAAGACGGCGACACG 179
|||||||| | ||||||| | | ||||||||||||||||||||| ||||||||| ||||
Sbjct 143 TTGTATGGATCGATCCGA-AGTTCAAATCCTCCACAAGAGTTGACGAAGACGGCAACACT 201
Query 180 TGTCCAACGTGGAACGAGACATTTGTCATCCCTTTGCCTCCGGCCAACGACGATGACGAC 239
||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 202 TGTACAACGTGGAACGAGACATTTGTCATCGCTTTACCTCCGGCCAACGACGATGACGAC 261
Query 240 AAGGTATACATCGACATCGTACACGCAGGAGGTGAAAAGAACACAAAGCCCCTCATCGGC 299
|||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 262 AAGGTATACATCAACATCGTACACGCAGGCCGTGAAGAGAACACAAAGCCCCTCATCGGC 321
Query 300 TCCGCCCATCTCAGCCTCCGTGATGTCATTGATGACGTCGGCTTTGGCGTCCCTTTCATG 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 322 TCCGCCCATCTCAGCCTCCGTGATGTCATTGATGACGTCGGCTTCGGCGTCCCCTTCATG 381
Query 360 AAAACCCTCAAGCTCAAACGTCCCTCCGGCCGACCACACGGCAAACTCGAACTT-ACCGT 418
|||||||||||||||||||| ||||| |||||||| || ||||||||||| | | || ||
Sbjct 382 AAAACCCTCAAGCTCAAACGCCCCTCTGGCCGACCTCAGGGCAAACTCGA-CGTCACTGT 440
Query 419 TACCGTTCGAGAGCCTC 435
|||||||||||| |||
Sbjct 441 CACCGTTCGAGAGACTC 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37072800486
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5