BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941931
Length=1021
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24020.1 | Symbols: MIND, ARC11, ATMIND1 | septum site-deter... 1594 0.0
> AT5G24020.1 | Symbols: MIND, ARC11, ATMIND1 | septum site-determining
protein (MIND) | chr5:8116680-8118030 FORWARD LENGTH=1351
Length=1351
Score = 1594 bits (863), Expect = 0.0
Identities = 974/1027 (95%), Gaps = 9/1027 (1%)
Strand=Plus/Plus
Query 1 CTGAAGAAGCA--A-CACTATCAATGGCGTCTCTGAGATTGTTCTCCACGAATCATCAAT 57
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 29 CTGAAGAAGCAGCAGCACTATCAATGGCGTCTCTGAGATTGTTCTCAACGAATCATCAAT 88
Query 58 CTCTTCTCCTTCCATCGTCTCTCTCACACAAA-CCTCTAATATCTTCACCACGATTCGTC 116
|||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 89 CTCTTCTCCTTCCATCATCTCTCTCACA-AAAGACTCTAATATCTTCACCAAGATTCGTC 147
Query 117 AATAACCCTAGCAGACGGAGTCCAATACGATCCGTTCTTCAATTTAATCGCAAACCGGAA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 AATAACCCTAGCAGACGGAGTCCAATACGATCCGTTCTTCAATTTAATCGCAAACCGGAA 207
Query 177 CTCGCCGGAGAAACGCCGCGTATCGTTGTTATCACCTCCGGAAAAGGCGGTGTTGGAAAG 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 208 CTCGCCGGAGAAACGCCGCGTATCGTCGTTATCACCTCCGGAAAAGGCGGTGTTGGAAAG 267
Query 237 ACGACAACCACCGCAAATGTCGGTCTCTCTCTAGCTCGTTACGGCTTCTCAGTTGTCGCT 296
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 268 ACGACAACCACCGCAAATGTCGGTCTCTCTCTCGCTCGTTACGGTTTCTCAGTTGTCGCC 327
Query 297 ATTGACGCTGACCTTGGACTTCGTAATCTCGATCTCCTTCTAGGGTTAGAGAATCGAGTC 356
|||||||| |||||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct 328 ATTGACGCCGACCTTGGTCTCCGTAACCTCGATCTCCTCCTAGGGTTAGAGAATCGAGTC 387
Query 357 AATTACACTTGCGTCGAGGTTATAAACGGAGATTGTCGTCTCGATCAAGCTCTGGTACGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 AATTACACTTGCGTCGAGGTTATAAACGGAGATTGTCGTCTCGATCAAGCTCTGGTACGT 447
Query 417 GATAAGCGTTGGTCGAATTTTGAATTGCTATGTATTTCGAAACCTAGATCGAAACTTCCG 476
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 448 GATAAGCGTTGGTCGAATTTCGAATTGCTATGTATATCTAAACCTAGATCGAAACTTCCG 507
Query 477 ATGGGATTTGGTGGAAAAGCGTTGGAATGGCTTGTTGATGCGTTGAAAACGAGACCGGAA 536
|||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 508 ATGGGATTTGGTGGTAAAGCATTGGAATGGCTTGTGGATGCGTTGAAAACTAGACCGGAA 567
Query 537 GGTTCACCGGACTTCATTATCATTGATTGTCCTGCAGGAATCGATGCCGGGTTTATAACC 596
||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 568 GGTTCACCGGATTTCATCATCATCGATTGTCCTGCAGGAATCGATGCCGGATTCATAACC 627
Query 597 GCCATTACTCCGGCGAATGAAGCAGTCCTGGTTACAACTCCGGATATAACAGCGCTAAGA 656
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||
Sbjct 628 GCCATTACTCCGGCGAATGAAGCAGTTCTGGTAACAACTCCGGATATAACAGCGTTAAGG 687
Query 657 GATGCAGATAGGGTTACGGGTTTGTTAGAATGCGACGGAATTC-GAGATATAAAGATGAT 715
||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct 688 GATGCTGATAGGGTTACGGGTTTGTTAGAATGCGATGGAAT-CAGAGATATAAAGATGAT 746
Query 716 TGTGAACCGAGTGAGAACTGATATGATCAAAGGAGAGGATATGATGTCAGTGTTAGATGT 775
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 747 TGTGAACAGAGTGAGAACTGATATGATTAAAGGAGAGGATATGATGTCAGTGTTAGATGT 806
Query 776 GCAGGAGATGTTGGGATTGTCATTGCTTGGCGTGATTCCTGAAGATTCTGAGGTTATTCG 835
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 807 GCAGGAGATGTTGGGATTGTCATTGCTTGGTGTAATTCCTGAAGATTCTGAGGTTATTCG 866
Query 836 TAGCACGAATCGAGGGTTTCCGCTTGTTCTGAACAAGCCTCCAACGCTTGCGGGATTGGC 895
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 867 AAGCACGAATCGAGGGTTTCCGCTTGTTCTGAATAAGCCTCCTACGCTTGCGGGATTGGC 926
Query 896 ATTTGAGCAGGCAGCTTGGAGACTCGTGGAGCAAGATAGTATGAAGGCTGTTATGGTGGA 955
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 927 GTTTGAGCAGGCGGCTTGGAGACTCGTTGAGCAAGATAGTATGAAGGCTGTTATGGTGGA 986
Query 956 GGAAGAGCCTAAGAAACGCGGCTTCTTCTCTTTCTTTGGCGGCTAAATGGCATAA-GGAG 1014
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 987 GGAAGAACCTAAGAAACGTGGCTTCTTCTCTTTCTTTGGCGGCTAAATGGCA-AACGGAT 1045
Query 1015 CGAACCG 1021
|||||||
Sbjct 1046 CGAACCG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50033210412
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5