BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941933

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24040.1 | Symbols:  | Protein of unknown function (DUF295) ...   429    7e-120


> AT5G24040.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr5:8126045-8127336 REVERSE LENGTH=1122
Length=1122

 Score =  429 bits (232),  Expect = 7e-120
 Identities = 277/299 (93%), Gaps = 2/299 (1%)
 Strand=Plus/Plus

Query  1     ACAAACTCATTCTCATAGAGATGTACACAAAGAGTCGATACGATTTTCACATACCTAACA  60
             |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| || |
Sbjct  746   ACAAACTCATTCTCGTAGAGATGTGCACAAAGAGCCGATACGATTTTCACATACCAAATA  805

Query  61    TCCGTGAGAAAAATATATGGTTCGAAATATCAGAGTTAAACGAGGAAAGAAACGATTGGG  120
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  806   TCCGTGAGAAAAAGATATGGTTCGAAATATCAGAGTTAAACGAGGAAAGAAACGATTGGG  865

Query  121   ATCAAGTGGAAGATATGGATGGTAGCGTGTTGTTCTTGGAGCATTATTGCACTTTTTCAT  180
             ||||||||||||||||||| ||| | ||||||||||||||||||||||| || || ||||
Sbjct  866   ATCAAGTGGAAGATATGGACGGTCGTGTGTTGTTCTTGGAGCATTATTGTACCTTCTCAT  925

Query  181   GCTTGGCTACTGAGATTCCGGGGTTTAGAGCTAACTCTATAATCTTCATGGACTTGTGGG  240
             ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct  926   GCTTGGCTACTGAAATTCCAGGGTTTAGGGCTAACTCTATAATCTTCATGGACTTGTGGG  985

Query  241   GAGGATCTAACTCGTATGAACATGAAAGCATTCTCGTGTAAGAATATGA-TCAGAAAGG  298
             ||||||||||||| ||||||| |||||||||||||||||| |||| | | | |||||||
Sbjct  986   GAGGATCTAACTCATATGAACTTGAAAGCATTCTCGTGTATGAAT-TCAATGAGAAAGG  1043



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5