BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941940
Length=2682
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24080.1 | Symbols: | Protein kinase superfamily protein | ... 2464 0.0
> AT5G24080.1 | Symbols: | Protein kinase superfamily protein
| chr5:8139253-8141122 REVERSE LENGTH=1602
Length=1602
Score = 2464 bits (1334), Expect = 0.0
Identities = 1473/1541 (96%), Gaps = 6/1541 (0%)
Strand=Plus/Plus
Query 1146 GGTACCTTCAAGATCTCGACGGTCCAAGAGACCAACTACTATTTCTCAGAACGTTCTGTT 1205
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4 GGTAGCTTCAAGATCTCGACGGTCCAAGAGACCAACTACTATTTTTCAGAACGTTCTGTC 63
Query 1206 ATCGAGAATATCAGCGATAT--G-AGCGTGAGGAGATGCGGTGAGATGTGTTTGTCGGAT 1262
||||| |||||||||||||| | | |||||||| ||||||||||||||||||||| |||
Sbjct 64 ATCGAAAATATCAGCGATATCAGCAACGTGAGGAAATGCGGTGAGATGTGTTTGTCAGAT 123
Query 1263 TGCAAGTGTGTGGCTTCAGTTTACGGTTTAGATGAAGAGACGCCTTATTGTTGGATTCTA 1322
||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||| ||
Sbjct 124 TGCAAGTGTGTAGCTTCAGTTTATGGTTTAGATGATGAGAAGCCTTATTGTTGGATTTTA 183
Query 1323 AAGAGTCTGAATTTTGGCGGGTTTCGAGATCCTGGCTCGACCCTTTTCGTGAAGACTAGA 1382
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 184 AAGAGTCTGAATTTTGGCGGGTTTCGAGATCCTGGCTCAACCCTTTTCGTGAAGACTAGA 243
Query 1383 GCTAATGAATCTTATCCCTCAAATTCGAATAATAATGATTCTAAATCGCGTAAGAGCCAC 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 GCTAATGAATCTTATCCCTCAAATTCGAATAATAATGATTCTAAATCGCGTAAGAGCCAC 303
Query 1443 GGATTAAGACAAAAGGTTCTGGTGATTCCTATAGTTGTGGGGATGCTTGTGCTTGTGGTA 1502
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 304 GGATTAAGACAAAAGGTTCTGGTGATTCCTATAGTTGTGGGGATGCTTGTGCTTGTGGCA 363
Query 1503 TTACTTGGGATGTTGTTATATTATAATGTAGATAGGCAGAGAACACTAAAGAGAGCCGCA 1562
||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 364 CTACTTGGGATGTTGTTATACTATAATTTAGATAGGAAGAGAACACTAAAGAGAGCCGCA 423
Query 1563 AAGAACTCGCTTATCCTTTGTGACTCTCCTGTGAGTTTCACTTACCGCGATCTCCAGAAC 1622
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AAGAACTCTCTTATCCTTTGTGACTCTCCTGTGAGTTTCACTTACCGCGATCTCCAGAAC 483
Query 1623 TGTACCAATAACTTCTCCCAACTTCTTGGATCAGGTGGATTTGGGACAGTATACAAAGGA 1682
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 TGTACCAACAACTTCTCCCAACTTCTTGGATCAGGTGGATTTGGGACAGTATACAAAGGA 543
Query 1683 ACAGTAGCGGGTGAAACGCTGGTCGCGGTGAAGAGATTAGACAGAGCATTATCTCATGGT 1742
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACAGTAGCGGGTGAAACGCTAGTCGCGGTGAAGAGATTAGACAGAGCATTATCTCATGGC 603
Query 1743 GAGAGAGAGTTCATCACTGAAGTCAATACCATTGGTTCAATGCATCACATGAACCTCGTT 1802
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 GAGAGAGAGTTCATCACTGAAGTCAATACCATTGGTTCAATGCATCACATGAACCTTGTT 663
Query 1803 CGCTTGTGTGGTTACTGCTCGGAAGACTCACATCGGCTTCTAGTTTATGAGTACATGATA 1862
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 664 CGCTTGTGTGGTTACTGCTCGGAAGACTCACACCGGCTTCTAGTTTATGAGTACATGATA 723
Query 1863 AATGGGTCGTTAGACAAATGGATATTCTCTTCAGAACAGACAGCCAATCTACTTGATTGG 1922
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 724 AATGGGTCGTTAGACAAATGGATATTCTCTTCAGAACAGACAGCTAATCTACTTGATTGG 783
Query 1923 CGAACACGTTTTGAGATAGCGGTTGCGACTGCACAGGGAATCGCGTATTTTCATGAGCAA 1982
|||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 784 CGAACACGTTTTGAAATAGCGGTTGCGACTGCACAAGGAATCGCATATTTTCATGAGCAG 843
Query 1983 TGTCGGAACAGGATAATTCATTGCGACATTAAACCTGAAAACATCTTATTGGATGAGAAT 2042
||||| |||||||| || ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 844 TGTCGAAACAGGATTATACATTGCGACATTAAACCTGAAAACATCTTGTTGGATGATAAT 903
Query 2043 TTTTGTCCTAAGGTATCAGATTTTGGGCTAGCCAAAATGATGGGGAGAGAGCATTCACAT 2102
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 904 TTTTGTCCTAAGGTATCAGATTTTGGGCTAGCCAAGATGATGGGGAGAGAGCATTCGCAT 963
Query 2103 GTAGTTACGATGATTAG-GGGTACGAGAGGCTATCTAGCGCCTGAATGGGTGAGTAACCG 2161
|| |||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 964 GTGGTTACGATGATTAGAGGG-ACGAGAGGGTATCTAGCGCCCGAATGGGTGAGTAACCG 1022
Query 2162 CCCGATCACGGTGAAGGCCGATGTGTATAGTTATGGAATGCTTCTTCTTGAGATCGTTGG 2221
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1023 CCCGATCACGGTGAAGGCCGATGTGTATAGTTATGGAATGCTTCTTCTAGAGATCGTAGG 1082
Query 2222 TGGTAGGAGAAATCTTGATATGTCCTTTGGCACTGATGATTTCTTTTACCCTGGATGGGC 2281
|||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||
Sbjct 1083 TGGTAGGAGAAATCTTGATATGTCCTATGACGCTGAGGATTTCTTTTACCCTGGATGGGC 1142
Query 2282 CTACAAGGAACTAACGAATGGGACAGCTTTGAAAGCTGTGGATAAGAGGCTACAAGGAGT 2341
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1143 CTACAAGGAACTAACGAATGGGACATCTTTGAAAGCTGTGGATAAAAGGCTACAAGGAGT 1202
Query 2342 AGCAGAGGAAGAAGAAGTATTGAAAGCTCTTAAAGTAGCTTTCTGGTGCATACAAGACGA 2401
||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 1203 AGCAGAGGAAGAAGAAGTAGTGAAGGCTCTTAAAGTGGCTTTCTGGTGCATACAAGACGA 1262
Query 2402 AGTATCGTTGAGGCCTTCGATGGGTGAGGTGGTGAAGCTTTTAGAAGGTTCTTCGGACGA 2461
||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 1263 AGTATCGATGAGGCCGTCGATGGGTGAGGTGGTTAAGCTTTTAGAAGGCACTTCGGATGA 1322
Query 2462 GGTAAATCTGCCACCGATGCCGCAGACGATTCTAGAACTTATAGAGGAAGGATTGGAGGA 2521
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GATAAATCTGCCACCGATGCCACAGACGATTCTAGAACTTATAGAGGAAGGATTGGAGGA 1382
Query 2522 TGTGTATAGAGCGATGAGGAGAGAGTTCAATAATCAGCTTAGCTCTTTGACTGTTAATAC 2581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 TGTGTATAGAGCGATGAGGAGAGAGTTCAATAATCAGCTTAGCTCTTTGACTGTTAATAC 1442
Query 2582 CATCACAACCTCTCAGAGTTATCATTCCTCCTCTCGGTCTCATGCTACTTGTAGTTATTC 2641
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1443 AATCACAACCTCTCAGAGTTATCGTTCCTCCTCTCGGTCTCATGCTACTTGTAGTTATTC 1502
Query 2642 TTCAATGTCTCCTAGGTAGtttttgttttgttttttGCATC 2682
||||||||||||||||||||||| |||| |||||||||||
Sbjct 1503 TTCAATGTCTCCTAGGTAGTTTTC-TTTTCTTTTTTGCATC 1542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133193233665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5