BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941943
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24105.1 | Symbols: AGP41 | arabinogalactan protein 41 | chr... 361 2e-99
> AT5G24105.1 | Symbols: AGP41 | arabinogalactan protein 41 | chr5:8151924-8152867
FORWARD LENGTH=576
Length=576
Score = 361 bits (195), Expect = 2e-99
Identities = 220/232 (95%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 3 GGAGGAA-AAATAATTGAAATGTCGAGCTCAAGGCTTTTCTTCGGAGTTTCTACAATGGT 61
||||||| ||| || ||||||||| |||| |||||||||||||||||||||||||| ||
Sbjct 156 GGAGGAATAAA-CATCGAAATGTCGGGCTCGAGGCTTTTCTTCGGAGTTTCTACAATTGT 214
Query 62 ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACAAGCTCAATCCGCGGCTCCTGCTCC 121
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 215 ATCGATAATTTTCGCCATTTTGTTGCCGATGGCACATGCTCAATCCGCAGCTCCTGCTCC 274
Query 122 GGCTCCAACAAGTGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 GGCTCCAACAAGCGACGGAACAACGATAGACCAAGGCATAGCATATGTCCTTATGTTGGT 334
Query 182 GGCTTTGGTCCTCACATATCTCATCCATTGATCCTTTTGTCAATTTAATTTT 233
||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 335 GGCTTTGGTCCTCACATATCTCATCCATTGATCCTCTTGTTAATTTAATTTT 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10505959541
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5