BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941960
Length=422
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5... 405 2e-112
AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5... 390 5e-108
AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5... 291 5e-78
> AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5:8195600-8197119
FORWARD LENGTH=1128
Length=1128
Score = 405 bits (219), Expect = 2e-112
Identities = 316/363 (87%), Gaps = 6/363 (2%)
Strand=Plus/Plus
Query 24 GGTT-CAAGAAGACGATCCAAACAAAGCATCATGGATACCTTATTTATATGTGGACCCAG 82
|||| ||| ||||||||||||| | |||||||||||||||||||||||||||| | ||||
Sbjct 729 GGTTCCAA-AAGACGATCCAAAGACAGCATCATGGATACCTTATTTATATGTGAATCCAG 787
Query 83 CCGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGA 142
| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |||
Sbjct 788 CAGATCCAATATGTGCAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGA 847
Query 143 TCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGCTC 201
| || |||||| | ||||||| || | ||| || |||| ||||||||| |||||||| |
Sbjct 848 TAGGAGCAAGCCACATCGAGAGAATC-GGTGCTAGAAAATCAGTTAGGAGTCTATTGGTG 906
Query 202 GAAAGAAAAGGAAAA-TCATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTTCC 260
| ||||| ||||||| | |||| |||||||||||||| |||||||||| |||||||||||
Sbjct 907 GGAAGAAGAGGAAAACT-ATCACCGTCGGATTTGTCATCGGAACCTCTCCACCTTCTTCC 965
Query 261 TTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTATGACAGCTCATGGGCT 320
||||||||||||| ||| |||||||||||||| |||| ||| | ||||||||| || ||
Sbjct 966 ATCAGCAGATATGACTGTAAACAAGAACAAACCGACTAAGTCAACGACAGCTCACGGACT 1025
Query 321 TCACCAATGGTGGGAGCGAGACTCGTCACTGAGAGCAAATTGGGAGAGCCGCTGCATTAG 380
||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||||||| ||
Sbjct 1026 TCACCAATGGTGGGAGCGAGACTCGACACTGAGGGAAAATTGGGAAAGCTGCTGCATCAG 1085
Query 381 ACC 383
|||
Sbjct 1086 ACC 1088
> AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5:8225861-8227551
FORWARD LENGTH=1131
Length=1131
Score = 390 bits (211), Expect = 5e-108
Identities = 316/364 (87%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 24 GGTTCAAGAAGACGATCCAAACAA-AGCATCATGGATACCTTATTTATATGTGGACCCAG 82
||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||
Sbjct 741 GGTTCAAGAAGACGATCCAAA-AACAGCATCATGGATACCTTATTTATACGTGAACCCAG 799
Query 83 CCGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGA 142
| |||||||||||||| |||||||| |||||||||| |||||||| ||||||||| |||
Sbjct 800 CAGATCCAATATGTGCGGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGA 859
Query 143 TCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGCTC 201
| || |||||| | ||||||| || |||| ||||||||||||||||| ||||| | |
Sbjct 860 TAGGAGCAAGCCACATCGAGAGAA-TCGGTGCTGGAAAGTCAGTTAGGAGTCTA-T--T- 914
Query 202 GAAAGAAAAGGAAAATCATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTTCCT 261
| | | |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 915 G-ATG----GGAAAATCATCATCATCAGATTTGTCAACGGAACCTCTTCACCTTCTTCCA 969
Query 262 TCAGCAGATATGATTGTCAACAAGAACAAACCTACTACG-TCTATGACAGCTCATGGGCT 320
||||||||||||||||| |||||||||||||| |||| | | ||||||||||||||| ||
Sbjct 970 TCAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAGCTCATGGACT 1028
Query 321 TCACCAATGGTGGGAGCGAGACTCGTC-ACTGAGAGCAAATTGGGAGAGCCGCTGCATTA 379
||| ||||||||||||||||||||| | | |||| | ||||||||| ||| ||||||| |
Sbjct 1029 TCATCAATGGTGGGAGCGAGACTCGGCCA-TGAGGGAAAATTGGGAAAGCTGCTGCATCA 1087
Query 380 GACC 383
||||
Sbjct 1088 GACC 1091
> AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5:8199757-8201051
FORWARD LENGTH=1016
Length=1016
Score = 291 bits (157), Expect = 5e-78
Identities = 297/360 (83%), Gaps = 28/360 (8%)
Strand=Plus/Plus
Query 24 GGTTCAAGAAGACGATCCAAACAAAGCATCATGGATACCTTATTTATATGTGGACCCAGC 83
|||||||||||| |||||| | ||||| ||||||||||||||||||||| | |||||
Sbjct 345 GGTTCAAGAAGA--TTCCAAA-ACAGCATTGTGGATACCTTATTTATATGTGAATCCAGC 401
Query 84 CGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAAAATTCATGTCTAAGAT 143
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 402 AGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGTCTAAGAT 461
Query 144 CGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAG-TCAGTTAGGTGTCTATTG-CT 200
||| |||||| | ||||||| || | |||||| ||| | ||| |||| || || | |
Sbjct 462 CGGAGCAAGCCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCCATGGACC 519
Query 201 CGAAAGAAAAGGAA-A--ATCATCATCGTC---------G---GATTTGTCAACGGAACC 245
|||| ||| ||||| | ||||||||| || | |||||||||| ||||||
Sbjct 520 CGAA-GAATAGGAACATCATCATCATCATCATCACCACTGTCTGATTTGTCAATGGAACC 578
Query 246 TCTTCACCTTCTTCCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTAT 305
||||||||||||||| ||||||||||||| ||| |||||||||||| | || |||||||
Sbjct 579 TCTTCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTTCGTCTAT 638
Query 306 GACAGCTCATGGGCTTCACCAATGGTGGGAGCGAGACTC-GTCACTGAGAGCAAA-TTGG 363
| |||||||||||||||||||||||||||||| |||||| ||| || || | ||| ||||
Sbjct 639 GGCAGCTCATGGGCTTCACCAATGGTGGGAGCAAGACTCCGTC-CTAAG-GAAAAATTGG 696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20006564102
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5