BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941961
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5... 821 0.0
AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5... 784 0.0
AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5... 503 1e-141
> AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5:8195600-8197119
FORWARD LENGTH=1128
Length=1128
Score = 821 bits (444), Expect = 0.0
Identities = 621/706 (88%), Gaps = 14/706 (2%)
Strand=Plus/Plus
Query 335 AACACCCTCCATCATGGCAGTAGGTCTATGCACGCCATACGA-GCAATCCGCAATGTGGT 393
|||||||||||||| || | ||||||||| |||||||| | | ||||||| | ||||
Sbjct 430 AACACCCTCCATCAAGGTGGCAGGTCTATGTACGCCATA-AATGTAATCCGCCGTATGGT 488
Query 394 GGACAAACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGT 453
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 489 GGACAAACACAACCATTCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGT 548
Query 454 GTTGTTGGCTGGAAAGACCATGACACGTTTC-GGATAT-TTCCTCGAAAGTTACATATTC 511
|||| |||||||||||||||||| | |||| |||| | ||||||| ||||||||||||
Sbjct 549 GTTGCTGGCTGGAAAGACCATGA-AAATTTCTGGAT-TCCTCCTCGAGAGTTACATATTC 606
Query 512 AACCCACCCATCTCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGT 571
||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 607 AACCCACCCATCTCGTCTATTCCTCTAGAGCAGCTACCTGGTGGCGATATAATTAAAGGT 666
Query 572 ATGTTTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGCCATTGCCTTAACCGATCTA 631
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 667 TTGTTTCAAATCACCAAGAGTGTCGTCAAAGCCACCGTAGCCATGGCCTTAACCGATCTA 726
Query 632 CATGTTC-AAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAATTC 690
|| |||| || |||| |||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 727 CAGGTTCCAA-AAGACGATCCAAAGACAGCATCATGGATACCTTATTTATATGTGAATCC 785
Query 691 AGCAGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGTCTAA 750
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
Sbjct 786 AGCAGATCCAATATGTGCAGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGA 845
Query 751 GATCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGC 809
||| || |||||| | ||||||| || | ||| || |||| ||||||||| ||||||||
Sbjct 846 GATAGGAGCAAGCCACATCGAGAGAATC-GGTGCTAGAAAATCAGTTAGGAGTCTATTGG 904
Query 810 TCGAAAGAAAAGGAAAA-TCATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTT 868
| | ||||| ||||||| | |||| |||||||||||||| |||||||||| |||||||||
Sbjct 905 TGGGAAGAAGAGGAAAACT-ATCACCGTCGGATTTGTCATCGGAACCTCTCCACCTTCTT 963
Query 869 CCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTACGTCTATGACAGCGCATGGA 928
|| ||||||||||||| ||| |||||||||||||| |||| ||| | |||||| || |||
Sbjct 964 CCATCAGCAGATATGACTGTAAACAAGAACAAACCGACTAAGTCAACGACAGCTCACGGA 1023
Query 929 CTTCATCAGTGGTGGGAGCGAGACCCTACTCTGAGGGAAAATTGGGAAAGCTGCTGCATT 988
||||| || ||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1024 CTTCACCAATGGTGGGAGCGAGACTCGACACTGAGGGAAAATTGGGAAAGCTGCTGCATC 1083
Query 989 AGACCCAAGTC-TAAAGGCAAATTGCACCAATTGACCATACAATAA 1033
||||| | | | ||||||||||| | ||| ||||||||||||||
Sbjct 1084 AGACCTTAC-CATGAAGGCAAATTGGAGCAACTGACCATACAATAA 1128
> AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5:8225861-8227551
FORWARD LENGTH=1131
Length=1131
Score = 784 bits (424), Expect = 0.0
Identities = 613/703 (87%), Gaps = 17/703 (2%)
Strand=Plus/Plus
Query 335 AACACCCTCCATCATGGCAGTAGGTCTATGCACGCCATACGAGCAATCCGCAATGTGGTG 394
|||||||||||| | ||| |||||||| |||| |||||||||||||| |||| | |||||
Sbjct 442 AACACCCTCCATGAAGGCGGTAGGTCTTTGCAGGCCATACGAGCAATACGCAGTATGGTG 501
Query 395 GACAAACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTG 454
|||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 502 GACAAACACAGTGAAGCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTG 561
Query 455 TTGTTGGCTGGAAAGACCATGACACGTTTCGGATATT-TCCTCGAAAGTTACATATTCAA 513
||| |||||||||||||||||||| |||| |||| | |||||||||||||||| |||||
Sbjct 562 TTGCTGGCTGGAAAGACCATGACAAGTTTTGGAT-TCCTCCTCGAAAGTTACATCTTCAA 620
Query 514 CCCACCCATCTCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGTAT 573
|||||||||||||| |||||||||||| ||| ||||||||||| | | |||||||| |
Sbjct 621 CCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACCTGGGGGAAAAAAAATTAAAGGTGT 680
Query 574 GTTTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGCCATTGCCTTAACCGATCTACA 633
||||||| ||||||||| ||||||||||||||||||||| || | |||||||||||||||
Sbjct 681 GTTTCAATTCACCAAGACTGTCGTCAAAGCTACCGTAGCTATGGTCTTAACCGATCTACA 740
Query 634 TGTTCAAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGAATTCAGC 693
||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 741 GGTTCAAGAAGACGATCCAAAAACAGCATCATGGATACCTTATTTATACGTGAACCCAGC 800
Query 694 AGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGTCTAAGAT 753
||||||||||||||| |||| |||||||||||||| || |||||||||||||||| ||||
Sbjct 801 AGATCCAATATGTGCGGGATACATCGATTACTTCAGACACAAAACCTTCATGTCTGAGAT 860
Query 754 CGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAGTCAGTTAGGTGTCTATTGCTCG 812
|| |||||| | ||||||| || | ||| ||||||||||||||||| |||||||| | |
Sbjct 861 AGGAGCAAGCCACATCGAGAGAATC-GGTGCTGGAAAGTCAGTTAGGAGTCTATTGAT-G 918
Query 813 AAAGAAAAGGAAAATCATCATCGTCGGATTTGTCAACGGAACCTCTTCACCTTCTTCCTT 872
| | |||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 919 ---G----G-AAAATCATCATCATCAGATTTGTCAACGGAACCTCTTCACCTTCTTCCAT 970
Query 873 CAGCAGATATGATTGTCAACAAGAACAAACCTACTACG-TCTATGACAGCGCATGGACTT 931
|||||||||||||||| |||||||||||||| |||| | | ||||||||| |||||||||
Sbjct 971 CAGCAGATATGATTGTAAACAAGAACAAACCGACTAAGGT-TATGACAGCTCATGGACTT 1029
Query 932 CATCAGTGGTGGGAGCGAGACCCTACTC-TGAGGGAAAATTGGGAAAGCTGCTGCATTAG 990
||||| ||||||||||||||| | | | |||||||||||||||||||||||||||| ||
Sbjct 1030 CATCAATGGTGGGAGCGAGACTCGGC-CATGAGGGAAAATTGGGAAAGCTGCTGCATCAG 1088
Query 991 ACCCAAGTCTAAAGGCAAATTGCACCAATTGACCATACAATAA 1033
||| | || | ||||||||| | ||| ||||||||||||||
Sbjct 1089 ACCTTACCCTGACGGCAAATTGGAGCAACTGACCATACAATAA 1131
Score = 412 bits (223), Expect = 3e-114
Identities = 276/301 (92%), Gaps = 5/301 (2%)
Strand=Plus/Plus
Query 23 ATGGGACGAGGTTCTCTCA-GACAAATGAT--G-GGAGGAGGAGTGGTGGCCTTAGACTC 78
||||||||||||||||||| || || |||| | |||||||||| | |||||| ||||||
Sbjct 1 ATGGGACGAGGTTCTCTCAGGA-AATTGATAGGAGGAGGAGGAGAGATGGCCTCAGACTC 59
Query 79 AGATAGAGACATTTTCAGCATCTCTGGCCCCTTCCATCTTACATCTATTGATTGGAACAA 138
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 60 AGATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAA 119
Query 139 TTCGTACCATCGGACCTCAGTAGCATCAAGTTTGGTAAATGGAGTGTACATATTGGAACG 198
|||||||||||| || ||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 120 TTCGTACCATCGAACGTCAGTAGCATCAAGTTTAGTAAATGGAGTGTACACAATGGAACG 179
Query 199 GGACAGGCAAGAGAGACGGGTAGGTTCCGGATCACTAGCCATGCCCTGGTGGGATTTTTT 258
||||| |||||||| |||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 180 GGACAAGCAAGAGAAACGGGTAGGTTCTGAATCACGAGCCATGCCCTGGTGGGATTTTTT 239
Query 259 CAACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACGGCTCCATATATGGTGCCGT 318
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 240 CAACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACAGCTCCATATACGGTGCTGT 299
Query 319 T 319
|
Sbjct 300 T 300
> AT5G24190.1 | Symbols: | Lipase class 3-related protein | chr5:8199757-8201051
FORWARD LENGTH=1016
Length=1016
Score = 503 bits (272), Expect = 1e-141
Identities = 558/689 (81%), Gaps = 47/689 (7%)
Strand=Plus/Plus
Query 340 CCTCCATCATGGCAGTAGGTCTATGCACGCCATACGAGCAATCCGCAATGTGGTGGACAA 399
||||||||| ||| ||| |||| |||||||||| ||| |||||| | || | |||||
Sbjct 42 CCTCCATCAAGGCCCCAGGACTATCCACGCCATACAAGCTATCCGCGCTATGATTGACAA 101
Query 400 ACATAACCATTCAGCTATATGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGTT 459
||| | | | |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 102 ACACAGCGAATCAGCTATCTGGCTTGCTGGACACTCTTTGGGAGCCGCCCTAGTGTTGCT 161
Query 460 GGCTGGAAAGACCATGACACGTTTC-GGATAT--TTCCTCGAAAGTTACATATTCAACCC 516
||| || |||||||||| | |||| |||| | ||| |||| |||||||||||||||||
Sbjct 162 GGCCGGGAAGACCATGAAAA-TTTCTGGAT-TCCTTC-TCGAGAGTTACATATTCAACCC 218
Query 517 ACCCATC-TCGTCTATTCCTCTAGAACAGCTACCTGGGGGAGATATGCTTAAAGGTATGT 575
||||||| | |||||||||||||| ||||||||||| || | | | ||||||||| |||
Sbjct 219 ACCCATCATA-TCTATTCCTCTAGAGCAGCTACCTGGCGGCGTTCTACTTAAAGGTGTGT 277
Query 576 TTCAAATCACCAAGAGTGTCGTCAAAGCTACCGTAGC--C----A-T-TG-CCTTAACCG 626
||| ||||||| |||| ||||||||||||| | ||| | | | || ||||||| |
Sbjct 278 TTCGAATCACCGAGAGCCTCGTCAAAGCTACTGCAGCTACTGTTACTATGGCCTTAACTG 337
Query 627 ATCTACATGTTCAAGAAGAAGATCCAAAAACAGCATCATGGATACCTTATTTATATGTGA 686
||| || ||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 338 ATCAACGGGTTCAAGAAGAT--TCCAAAA-CAGCATTGTGGATACCTTATTTATATGTGA 394
Query 687 ATTCAGCAGATCCAATATGTGCAGGATTCATCGATTACTTCAAACGCAAAACCTTCATGT 746
|| |||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||
Sbjct 395 ATCCAGCAGATCCAATATGTGCAGGATACATTGATTACTTCAAACACAAAATCTTCATGT 454
Query 747 CTAAGATCGGTGCAAGCAAAATCGAGA-AAGCCGGTTCTGGAAAG-TCAGTTAGGTGTCT 804
|||||||||| |||||| | ||||||| || | |||||| ||| | ||| |||| ||
Sbjct 455 CTAAGATCGGAGCAAGCCACATCGAGAGAATC-GGTTCTAGAA-GCTCATTTAGAAATCC 512
Query 805 ATTG-CTCGAAAGAAAAGGAA-A--ATCATCATCGTC---------G---GATTTGTCAA 848
|| | | |||| ||| ||||| | ||||||||| || | ||||||||||
Sbjct 513 ATGGACCCGAA-GAATAGGAACATCATCATCATCATCATCACCACTGTCTGATTTGTCAA 571
Query 849 CGGAACCTCTTCACCTTCTTCCTTCAGCAGATATGATTGTCAACAAGAACAAACCTACTA 908
||||||||||||||||||||| ||||||||||||| ||| |||||||||||| | ||
Sbjct 572 TGGAACCTCTTCACCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAATCGGCTT 631
Query 909 CGTCTATGACAGCGCATGGACTTCATCAGTGGTGGGAGCGAGAC-CC-TACTCTGAGGGA 966
|||||||| |||| ||||| ||||| || |||||||||| |||| || | | || ||| |
Sbjct 632 CGTCTATGGCAGCTCATGGGCTTCACCAATGGTGGGAGCAAGACTCCGT-C-CTAAGGAA 689
Query 967 AAATTGGGAAAGCTGCT-GCATTAGACCC 994
||||||| ||| ||| | | ||||| |||
Sbjct 690 AAATTGGAAAAACTGTTTG-ATTAGGCCC 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5