BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941962
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24230.1 | Symbols: | Lipase class 3-related protein | chr5... 1760 0.0
> AT5G24230.1 | Symbols: | Lipase class 3-related protein | chr5:8228892-8230964
FORWARD LENGTH=1345
Length=1345
Score = 1760 bits (953), Expect = 0.0
Identities = 1087/1153 (94%), Gaps = 3/1153 (0%)
Strand=Plus/Plus
Query 1 GATGATAAGGTAGAGAAAACATGGAAGAAGACGATGATGATGTTATTGTGAAAGAGGGGA 60
|||||| ||||||||| || ||||||||||| |||||||| ||||| || | |||||||
Sbjct 93 GATGATTAGGTAGAGATAATATGGAAGAAGAAGATGATGAGGTTATGGTCAGAGAGGGGC 152
Query 61 TAATGGCATCTCAAAGAGAAATCTTCAGCATTTCTGGTCCAATCCATTTAACTTCCATTG 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TAATGGCCTCTCAAAGAGAAATCTTCAGCATTTCTGGTCCAATCCATTTAACTTCCATTG 212
Query 121 ATTGGAATAATTCTTACCATAGAACCTCGGTGGCATCATGTTTGGTACAAGCAGTGTACA 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 ATTGGAATAATTCTTATCATAGAACCTCGGTGGCATCATGTTTGGTACAAGCAGTGTACA 272
Query 181 CATTGGAACGAGACAGACAACAAAACAGGATTGGTCTAAAGTCACAAGCCAATCATTGGT 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 273 CATTGGAACGAGACAGACAACAAAACAGGATTGGCCTAAAGTCACAAGCCAATCATTGGT 332
Query 241 GGGAGTTTTTCAACTTCACTTTAGCCGAAACCCTAATCGACGACTCAGACGCATCCATAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 333 GGGAGTTTTTCAACTTCACTTTAGCCGAAACCCTAATCGACGACTCAGACGGATCTATAT 392
Query 301 ACGGCGCCGTTTTTGAATACAAACATTTCTTCTCTTACAATTACCATAATACCCCTCACT 360
||||||||||||| |||||||||||||||||||| |||||||||||| | |||||||| |
Sbjct 393 ACGGCGCCGTTTTCGAATACAAACATTTCTTCTCCTACAATTACCATCACACCCCTCATT 452
Query 361 CGAAACCACCTCCTCGTCACGTGATCGCTTTCCGTGGTACGATCTTGAAACGGCACTCTC 420
||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 453 CGAAACCACCTCCTCGTCACGTGATTGCTTTCCGTGGCACGATCTTGAAACCGCACTCTC 512
Query 421 GGTCACGTGACATTAGGCTCGACCTACGTTGCATCCGAGACAGTCTCCACGACAGCTTTA 480
||||||||||| ||| ||||||||||||||||||||||||| |||||| || ||| |
Sbjct 513 GGTCACGTGACCTTAAGCTCGACCTACGTTGCATCCGAGACTCTCTCCATGATAGCACTC 572
Query 481 GGTTCGTGCATGCGGTTCAGGTGATTCAAAGTGCGGTGGCTAAAACTGGTAATGCAGCTG 540
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 573 GGTTCGTGCATGCCATTCAGGTTATTCAAAGTGCGGTGGCTAAAACTGGTAATGCAGCCG 632
Query 541 TGTGGCTTGCCGGACATTCTCTTGGAGCTGCCGTGGCTTTGCTTGCCGGGAAGATTATGA 600
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 633 TGTGGCTCGCCGGACATTCTCTTGGAGCAGCCGTGGCTTTGCTTGCCGGGAAGATTATGA 692
Query 601 CGAGGTCTGGTTTTCCTCTTGAGAGTTACTTATTCAATCCTCCTTTCTCGTCGATTCCAA 660
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 693 CAAGGTCTGGTTTTCCTCTTGAGAGTTACTTATTCAATCCTCCTTTCTCGTCTATTCCGA 752
Query 661 TAGAGAAGCTATTGAAGAGTGAGAAGCTTAAACATGGAGTTCGATTCGCTGGAAGTCTTG 720
||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 753 TAGAGAAGCTAGTGAAGAGTGAGAAGCTTAAACATGGGGTTCGATTCGCCGGAAGTCTTG 812
Query 721 TAAAAGCCGGAGTAGCCATCGCCGTCAAGGGTCGCCACCATAACAAGGGTCTAGAAGACG 780
| ||||||||||| ||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 813 TTAAAGCCGGAGTTGCCATCGCCGTTAAGGGTCGCCACCATAATAAGGGTCAAGAAGACG 872
Query 781 ATTCCTTTATGAAGTTAGCATCATGGATGCCATATTTGTATGTGAATCCGTTAGATACAA 840
|||| || |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 873 ATTCGTTCATGAAGTTAGCATCATGGATACCATATTTGTATTTGAATCCGTTAGATACAA 932
Query 841 TATGCTCAGAATACATTGGTTACTTCAAGCACAGAAACAAAATGTTTGAGATCGGAGCCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TATGCTCAGAATACATTGGTTACTTCAAGCACAGAAACAAAATGTTTGAGATCGGAGCCG 992
Query 901 GTAAAATCGAAAGAATTGCTACGAGGAACTCACTTAGGAGTCTGTTGTCaggaggaggag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 GTAAAATCGAAAGAATTGCTACGAGGAACTCACTTAGGAGTCTGTTGTCAGGAGGAGGAG 1052
Query 961 gaggaggaggaCCGTCTTCAGATTCTTGTTCAGAGCCTCTTCATCTTTTGCCATCAGCGT 1020
||||||| | ||||||||||||| ||||||||||||||||||||| ||||| || |
Sbjct 1053 GAGGAGGTTCA---TCTTCAGATTCTTCTTCAGAGCCTCTTCATCTTTTACCATCGGCAT 1109
Query 1021 ATATGACGATAAACGCTAGCAAATCGCCGGATTTTAAGAGAGCTCATGGGATTCATCAAT 1080
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1110 ATATGACGATAAACGCTAGCAAATCGCCGAATTTTAAGAGAGCTCATGGGATTCATCAAT 1169
Query 1081 GGTGGGATCCCATGTTTAATGGTGAATATGTTTTGCATCAGTTTAATCACTGACTTCTAC 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1170 GGTGGGATCCCATGTTTAATGGTGAATATGTTTTGCATCAGTTTAATAACTAACTTCTAC 1229
Query 1141 TTTCGTTGCTTCA 1153
||| |||||||||
Sbjct 1230 TTTTGTTGCTTCA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5