BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941972 Length=529 Score E Sequences producing significant alignments: (Bits) Value AT4G08110.1 | Symbols: | transposable element gene | chr4:5083... 189 2e-47 AT1G48700.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 183 1e-45 > AT4G08110.1 | Symbols: | transposable element gene | chr4:5083926-5086640 REVERSE LENGTH=2715 Length=2715 Score = 189 bits (102), Expect = 2e-47 Identities = 128/140 (91%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 288 CAGAGCAACAAGC-ATCTCAAACTCGGATTGCAAACTTGGAGAGGCTTGTTAT-GTATTG 345 ||||||||||| | ||||||||||||||| ||||||||||||| ||||| ||| |||||| Sbjct 2241 CAGAGCAACAA-CAATCTCAAACTCGGATCGCAAACTTGGAGATGCTTG-TATCGTATTG 2298 Query 346 GAAAGAGAGTGATCCTGCCTTTGCAGCTTTTGTTGCATCTCAGCCACAACCAACTGCACC 405 |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 2299 GAAACAGAGTGATCCTGCGTTTGCAGCTTTTGTTGCATCTCAGCCACATCCAACTGCACC 2358 Query 406 AGCCAACACACAAGCCCCCA 425 ||||| ||||| |||| ||| Sbjct 2359 AGCCACCACACCAGCCACCA 2378 > AT1G48700.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:18011035-18012871 REVERSE LENGTH=1174 Length=1174 Score = 183 bits (99), Expect = 1e-45 Identities = 127/141 (90%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 152 AGGGATTCTGACGCAGACTTTCATGTGGAAGATTCAAAAATAACATTGAATGTTTGTTTG 211 |||||| |||||| || ||||||||||||||||||| | ||||||||||||||||||||| Sbjct 505 AGGGATGCTGACGTAGGCTTTCATGTGGAAGATTCAGACATAACATTGAATGTTTGTTTG 564 Query 212 AGTAAACAAGGAGAGGGAGGGGAAATATTTTTTGCAGGCACACAATGCAAGAAACATATG 271 ||||||||||| |||||||| |||||| |||| |||||| ||| |||||| ||||||||| Sbjct 565 AGTAAACAAGGTGAGGGAGGAGAAATACTTTTCGCAGGCGCACGATGCAATAAACATATG 624 Query 272 GATACAGATTCAAAGCCAGAG 292 |||| |||| ||||||||||| Sbjct 625 GATATAGATCCAAAGCCAGAG 645 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25318010088 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5