BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941987
Length=635
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24370.1 | Symbols: | Plant invertase/pectin methylesterase... 811 0.0
> AT5G24370.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr5:8320969-8321544 FORWARD
LENGTH=576
Length=576
Score = 811 bits (439), Expect = 0.0
Identities = 532/576 (92%), Gaps = 10/576 (2%)
Strand=Plus/Plus
Query 22 ATGACTCACTATATGAATATGAATCTGATCATCACTAGTCTTGTGATGATCTTGATTTCA 81
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCACTATATGAATATGAATCTGATCATCACTAGTCTTGTGATGATCTTGATTTCA 60
Query 82 CAATTGCCTTTTTCCTCAACTGTGAATCCAGACAAACCAACAAAGTCTATAATCGACAGA 141
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATTTGCCTTTTTCCTCAACTGTGAATCCAGACAAACCAACAAAGTCTATAATCGACAGA 120
Query 142 ATCTGCCACCAAACAGTGAACTTTAATGACTGCATAAT-GATTGTCACGTCACAGCTAAA 200
|||||| |||||||||||||||| ||||| || ||| ||||||||||||||||||| |
Sbjct 121 ATCTGCAACCAAACAGTGAACTTCAATGAGTGTG-AATTGATTGTCACGTCACAGCTACA 179
Query 201 TTCGCCGCACGCAAACATCGCGACCATAACG-AACGTGACGACAAAAAGAGCTCTGACGT 259
|||||||||||||| || |||||||||||| || |||| ||||||||||||||||||||
Sbjct 180 CTCGCCGCACGCAAATATAGCGACCATAACGGAA-GTGATGACAAAAAGAGCTCTGACGT 238
Query 260 TTGCTACGGAGACGCTTTCTCAAATCCAAGACTATCTTCTCCCAAATGCTACAGATCCTG 319
|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 239 TTGCTACGGAGACGGTTTCTCAAATCCAAGACTATCTTCTCCCAAACGCTACAGATACTC 298
Query 320 ATGACAAAGCCGTTTTCTCGGCTTGCGAGGTCGCTTACAAAGCCGTGGTTTCTAGTCTTC 379
| ||||||||||||||||| ||||||||| |||| |||||||||||||||||| ||||||
Sbjct 299 AGGACAAAGCCGTTTTCTCCGCTTGCGAGATCGCGTACAAAGCCGTGGTTTCTCGTCTTC 358
Query 380 AAAGTGCTTATACGTCGGTGAACAA-ACGTGATTACGTGTCGATGAAGGCACAGCAGAAT 438
| ||||||||||||||| |||| || | ||||||||||| ||||||||||||||||||||
Sbjct 359 AGAGTGCTTATACGTCGATGAAGAACA-GTGATTACGTGGCGATGAAGGCACAGCAGAAT 417
Query 439 CAAGCACTTAGGTATATTGATGTGTGTGA-GAAGAGGACTAACTTCTTTCGCCGGACTCC 497
||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 418 CAAGCACTTGGGTATATTGATGTGTGTGTTGA-GAGGACTAACTTCTTTCGCCGGACTCC 476
Query 498 GATTGTAGCAGTCAACTATTACGTGAGGTTGATGGTGAAGATTGCTTCCATTGCAGGCCA 557
||| ||||||| ||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 477 GATGGTAGCAGCCAACTATTATGTGAGGTTGACGGCGAAGATTGCTTCCATTGCAGGCCA 536
Query 558 GATCCTTGCTCCTTGTACGACCCCGTCCAC-GTCCC 592
||||||||||||| |||||||| ||||| | |||||
Sbjct 537 GATCCTTGCTCCTAGTACGACCACGTCC-CTGTCCC 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30642829670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5