BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941993
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24420.1 | Symbols: PGL5 | 6-phosphogluconolactonase 5 | chr... 1273 0.0
AT3G49360.1 | Symbols: PGL2 | 6-phosphogluconolactonase 2 | chr... 333 2e-90
> AT5G24420.1 | Symbols: PGL5 | 6-phosphogluconolactonase 5 | chr5:8336614-8338008
REVERSE LENGTH=1217
Length=1217
Score = 1273 bits (689), Expect = 0.0
Identities = 770/808 (95%), Gaps = 10/808 (1%)
Strand=Plus/Plus
Query 1 TTTCTCTCGT-ATAGGCAACAATGGCGCAGAGGAAGATGATTGTGTTTCCCACCAAGAAT 59
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 TTTCTCTC-TGATAGGCAACAATGGCGCAGAGGAAGATGATTGTGTTTCCCACCAAGAAT 168
Query 60 GAATTGTCTCG-AGCAATGGCTGAGTACACTGCCAATCTCTCCGCTAAGTTCATCAAGGA 118
|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 169 GAATTGTC-CGAAGCAATGGCTGAGTACACTGCCAATCTCTCCGCCAAGTTCATCAAAGA 227
Query 119 GAAAGGTCTTTTCACCGTTGTTCTCTCCGGCGGTGACCTCATTGATTGGCTCTGCAAGTT 178
|||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 228 GAAAGGCCTTTTCACCGTTGTTCTCTCCGGCGGTGACCTAATCGATTGGCTCTGCAAGTT 287
Query 179 GGTGCAACCTCCTTATATTGATTCAATCGAATGGTCAAAGTGGCACGTCTTTTGGGTCGA 238
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 288 GGTGCAACCTCCTTATATTGATTCAATCGAATGGCCAAAATGGCACGTCTTTTGGGTCGA 347
Query 239 CGAGAGGGTTTGTGCATGGGAAGATCCAGACAGTAACTACAAACTCGCCATGGAGGGTTT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TGAGAGGGTTTGTGCATGGGAAGATCCAGACAGTAACTACAAACTCGCCATGGAGGGTTT 407
Query 299 TCTCTCTAAGGTTCCGATTCCGGATAAGAACATCTACGCGATCGACAAGCACTGGGCGGC 358
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 408 TCTCTCTAAGGTTCCGATTCCGGATAAGAACATCTACGCAATCGACAAGCACTTGGCGGC 467
Query 359 TAATGGTAACGCTGAGCACTGCGCGGCACTCTACGAGGAATGTCTTAAA-AATCTGGTGA 417
| |||||||||| |||||||||||| | ||||||||||| ||||| ||| ||||||||||
Sbjct 468 TGATGGTAACGCCGAGCACTGCGCGACGCTCTACGAGGAGTGTCT-AAAGAATCTGGTGA 526
Query 418 AGGAAAAGATAATCCCAATATCGAAAAAGACAGGATATCCTGAGTTCGATCTACAGCTTC 477
| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 527 AAGAAAAGATTATCCCAATATCGAAAAAGACAGGGTATCCTGAGTTTGATCTACAACTTC 586
Query 478 TAGGGATGGGTCCTGATGGCCACATGGCGTCTCTCTTCCCAAACCATCCACAGATCAATG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TAGGGATGGGTCCTGATGGCCACATGGCGTCTCTCTTCCCAAACCATCCACAGATCAATG 646
Query 538 AGAAGCAGAAATGGGTCACTCACATCACCGACTCTCCAAAACCACCACCAAAGAGAATCA 597
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGAAGCAGAAATGGGTCACTTACATCACCGACTCTCCAAAACCACCACCAAAGAGAATCA 706
Query 598 CATTCACTTTACCGGTCATCAACTCTGCTTTGTACAATCTTATGGCCATTTGTGACAAAG 657
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 707 CATTCACTTTACCGGTCATCAACTCTACTTTGTACAATCTTATGGCCATTTGTGACAAAG 766
Query 658 CACCCGCAAAATCCGTGGCTGAGATCATGAAGCACAACAACCTTTCGTTACCTTCTGCTC 717
|||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 767 CACCGGCCAAATCCGTGGCTGAGATCATGAAGCACAACAACCTCTCGTTACCTTCTGCTC 826
Query 718 ATCTTAGTGCCCAAGTCGAAAATGTTTGGTACCTAGACCAAGCAGCTGCTTCCGAGCTCT 777
|||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 827 ATCTTAGTGCTCAAGTCGAAAATGTTTGGTACCTTGACCAAGCAGCTGCCTCCGAGCTCT 886
Query 778 AGAGAG----CCTAAACACATTAATATT 801
|||||| ||||||||||||||||||
Sbjct 887 AGAGAGGTAGCCTAAACACATTAATATT 914
> AT3G49360.1 | Symbols: PGL2 | 6-phosphogluconolactonase 2 | chr3:18303046-18304416
REVERSE LENGTH=1056
Length=1056
Score = 333 bits (180), Expect = 2e-90
Identities = 427/544 (78%), Gaps = 26/544 (5%)
Strand=Plus/Plus
Query 127 TTTTCACCGTTGTTCTCTCCGGCGGTGACCTCATTGATTGGCTCTGCAAGTTGGT-GCAA 185
||||||||||||||||||||||||| |||||||| | |||||||| || ||| | | ||
Sbjct 240 TTTTCACCGTTGTTCTCTCCGGCGGCGACCTCATAGCCTGGCTCTGGAAATTGTTAG-AA 298
Query 186 CCTCCTTATATTGATTCAATCGAATGGTCAAAGTGGCACGTCTTTTGGGTCGACGAGAGG 245
||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||
Sbjct 299 GCTCCTTATATTGATTCAATTGAGTGGTCTAAGTGGCACATCTTTTGGGTCGACGAGAGG 358
Query 246 GTTTGTGCATGGGAAGATCCAGACAGTAACTACAAACTCGCC-ATGGAGGGTTTTCTCTC 304
|||||||| ||||| || | || || ||||| |||||||| | | | |||||||||||
Sbjct 359 GTTTGTGCTTGGGATCATGCGGATAGCAACTATAAACTCGCTTACG-ATGGTTTTCTCTC 417
Query 305 TAAGGTTCC-GATTCCGGAT-AAGAACATCTACGCGATCGACAA-GCACTGGGCGGCT-A 360
|||||||| | |||| | | || ||||||||||| ||||| || | ||| || ||| |
Sbjct 418 CAAGGTTCCAG-TTCCAGCTGAA-AACATCTACGCTATCGATAACGGACTCGG-GGCAGA 474
Query 361 ATGGTAACGCTGAGC-ACTGC-GCGGCACTCTACGAGGAATGTCTTAAA-AATCTGGTGA 417
| || ||||| |||| | || || | | |||||||| || || ||| || | |||
Sbjct 475 A-GGCAACGCCGAGCTA--GCAGCTGAAAGGTACGAGGAGTGCCTCAAACAAAAAG-TGA 530
Query 418 AGGAAAAGATAATCCCAA--TATCGAAAAAGACAGGATATCCTGAGTTCGATCTACAGCT 475
| |||| ||||||| || || | ||| | || | ||| |||||||||| |||||
Sbjct 531 ACCAAAACATAATCCGAACGTA-C-AAATCTTCTGGTTTTCCACAGTTCGATCTTCAGCT 588
Query 476 TCTAGGGATGGGTCCTGATGGCCACATGGCGTCTCTCTTCCCAA-ACCATCCACAGATCA 534
|||||| ||||| || || || |||||||||||||| ||||| || || | |||||||
Sbjct 589 TCTAGGTATGGGACCGGACGGTCACATGGCGTCTCTATTCCCTGGAC-ATGCTCAGATCA 647
Query 535 ATGAGAAGCAGAAATGGGTCAC-TCACATCACCGACTCTCCAAAACCACCACCAAAGAGA 593
|||||||| |||||||||||| || || ||||| || || || ||||| |||| ||
Sbjct 648 ATGAGAAGGTGAAATGGGTCACATCT-ATAACCGATTCACCTAAGCCACCGTCAAAAAGG 706
Query 594 ATCACATTCACTTTACCGGTCATCAACTCTGCTTTGTACAATCTTATGGCCATTTGTGAC 653
|||||||| ||||||||||| ||||| | ||||| || ||| |||||||| | |||||
Sbjct 707 ATCACATTGACTTTACCGGTTATCAATTGTGCTTCCTATAATGTTATGGCCGTATGTGAT 766
Query 654 AAAG 657
||||
Sbjct 767 AAAG 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5