BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942000
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator ... 2385 0.0
> AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator
5 | chr5:8355951-8358873 REVERSE LENGTH=2257
Length=2257
Score = 2385 bits (1291), Expect = 0.0
Identities = 1592/1733 (92%), Gaps = 37/1733 (2%)
Strand=Plus/Plus
Query 2 AAGTGTTTGTGTTGTGATAATG---AGTAGCGAGGAAGTTA-TTGAAGTGACGGTGGTGA 57
|||||||||||||||||||||| ||||||||||||| || |||||||||||||||| |
Sbjct 309 AAGTGTTTGTGTTGTGATAATGACTAGTAGCGAGGAAG-TAGTTGAAGTGACGGTGGTTA 367
Query 58 AAGCAGCTGAGGCTGGTGGAGGAAAGTTATCACGGCGGAAGATGCGGAAGAAAGACGCCG 117
||||| |||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 368 AAGCACCTGAAGCTGGCGGAGGAAAGTTATCACGTCGGAAGATTCGGAAGAAAGACGCCG 427
Query 118 TAGATGGCGGCGGCGATGGTTTGGTGAAGTGGGAGAGGTTTCTCCCGAAAATCGCGCTAA 177
| | | ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 428 --G-T------GTTGATGGTTTGGTGAAGTGGGAGAGATTTCTCCCGAAAATCGCGCTTA 478
Query 178 GAGTTTTGCTTGTTGAAGCTGATGATTCGACTAGACAGATTATCTCTGCTCTTCTCAGGA 237
|||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 479 GAGTTTTGCTCGTTGAAGCTGATGATTCTACTAGACAGATTATCGCTGCTCTTCTCAGGA 538
Query 238 AATGTAGTTACAGAGTTGCTGCTGTGCCTGATGGCTTAAAGGCTTGGGAGATGCTTAAAG 297
|||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 539 AATGTAGTTACAGAGTTGCTGCAGTACCTGATGGCTTAAAAGCTTGGGAGATGCTAAAAG 598
Query 298 GAAAACCCGAAAGCGTCGATTTGATACTAACAGAGGTTGATCTGCCTTCGATCTCTGGTT 357
|||| || ||||| || ||||||||| |||||||||||||||| ||||| || ||||| |
Sbjct 599 GAAAGCCTGAAAGTGTTGATTTGATATTAACAGAGGTTGATCTACCTTCAATATCTGGAT 658
Query 358 ACGCTCTGCTAACACTTATCATGGAGCATGATATCTGCAAGAACATTCCTGTTAT-A--A 414
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 659 ATGCTCTGCTAACACTTATCATGGAGCATGATATTTGCAAGAACATTCCTGTTATAATGA 718
Query 415 -GT----AC-GGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATT 468
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGTCGACACAGGACTCGGTGAATACTGTGTATAAGTGTATGTTGAAAGGTGCGGCTGATT 778
Query 469 ATCTTGTTAAGCCGTTGAGGAGGAATGAGCTGAGAAATCTCTGGCAACATGTCTGGAGAA 528
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 779 ATCTTGTTAAGCCGTTGAGGAGGAATGAGCTTAGAAATCTTTGGCAGCATGTCTGGAGAA 838
Query 529 GACAAACTTCACTCGCTCCTGATAGCTTTCCGTTGG-ATGAGA------GACAGCAGAAA 581
||||||||||||| ||||||||||||||||| ||| |||||| |||||||||||
Sbjct 839 GACAAACTTCACTTGCTCCTGATAGCTTTCC-ATGGAATGAGAGTGTTGGACAGCAGAAA 897
Query 582 GCCGAGGGTGCGTCTGCAAACAATTCGAACGGAAAGAGAGACGAGCATGTTGTAATTGGG 641
||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||||
Sbjct 898 GCCGAGGGTGCGTCTGCAAACAACTCGAACGGAAAGAGAGACGATCATGTTGTGAGTGGG 957
Query 642 AATGGTGGTGATGCTCAGAGCTCGTGTACAAGACCAGAGATGGAAGGCGAGAGCGCAGAC 701
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 AATGGTGGTGATGCCCAGAGCTCGTGTACAAGACCAGAGATGGAAGGTGAGAGCGCAGAC 1017
Query 702 GTGGAGGTCAACGCGAGAGACGCAGTTCAGATGGAGTGCGCAAAGTCTCAGTTCAAAGAG 761
|||||||| | |||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 1018 GTGGAGGTTAGTGCGAGAGACGCAGTACAGATGGAGTGCGCAAAGTCTCAGTTTAATGAG 1077
Query 762 ACACGGCTTCTAGCAAATGAGATGCAGAATTCATCGAA--AAAAGCCATTGACTTCATGG 819
||||||||||||||||||||| ||||| | | | | || | ||||||||||||||||||
Sbjct 1078 ACACGGCTTCTAGCAAATGAGTTGCAG-AGTAAGC-AAGCAGAAGCCATTGACTTCATGG 1135
Query 820 GAGCATCGTTTAGAAGAACTGGACAACGTAACAGAGAAGAAAGTGTTGCCCAATACGAAT 879
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1136 GAGCATCGTTTAGAAGAACTGGACGACGTAACAGAGAAGAAAGTGTTGCTCAATACGAAT 1195
Query 880 CTCGGATAGAGCTTGATCTCTCTCTGAGAAGACCT-ATCGCTTCCGAGAACCAATCTTCT 938
||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||
Sbjct 1196 CTCGGATAGAGCTTGATCTTTCTCTGAGAAGACCTAAT-GCTTCTGAGAACCAATCTTCT 1254
Query 939 GGAGACCGGCCTTCTCTTCATCCTTCTAGTGCCTCAGCTTTCACACGGTACGTTCACAGG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GGAGACCGGCCTTCTCTTCATCCTTCTAGTGCCTCAGCTTTCACACGGTACGTTCACAGG 1314
Query 999 CCATTGCAGACACAATGTTCGGCCTCCCCGGTGGTTCCTGATCAAAGAAAGAATTTTGCG 1058
|| ||||||||||||||||| |||||||| |||||| ||||||||||||||||| ||||
Sbjct 1315 CCGTTGCAGACACAATGTTCAGCCTCCCCAGTGGTTACTGATCAAAGAAAGAATGTTGCA 1374
Query 1059 GCAAGTCAAGATGATAACATTGTGCTAATCAACCAATACAATACATCTGAACCACCTCCA 1118
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1375 GCAAGTCAAGATGATAACATTGTGCTAATGAACCAATACAATACATCTGAACCGCCTCCA 1434
Query 1119 AGTGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCGGGTCCACCG 1178
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1435 AATGCTCCAAGAAGAAACGACACCAGCTTTTACACTGGAGCTGACTCACCTGGTCCACCG 1494
Query 1179 TTTAGTAATCAGATGAATTCTTGGCCAGGACAGGGTTCTTACCCAACGCCAACCCCCATC 1238
|||||||||||| ||||||||||||| |||||| |||| ||||| ||||||||||| |||
Sbjct 1495 TTTAGTAATCAGCTGAATTCTTGGCCGGGACAGAGTTCATACCCTACGCCAACCCCTATC 1554
Query 1239 AATAATATACAGTTCAGGGGTCCCAACACAGCTTATGCATCTGCAATGGCTCCTGCTTCA 1298
|| |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct 1555 AACAATATACAGTTCAGAGATCCCAACACAGCTTATACATCTGCAATGGCTCCTGCTTCA 1614
Query 1299 GTCTCCCCAAGCCCTAGTTCCGTTAGCCCACATGAATACAGTTCCATGTTTCACCCATTC 1358
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1615 CTCTCCCCAAGCCCTAGTTCCGTTAGCCCGCATGAGTACAGTTCCATGTTTCACCCATTC 1674
Query 1359 AATGGTAAACCCGAGGGTTTGCAAGAGCGAGATGGTTCCATGGATGTAGAGGAGAGGAGA 1418
|| ||||||||||||| || ||||| || ||| |||||||||||||||| |||||||||
Sbjct 1675 AACAGTAAACCCGAGGGGTTACAAGACCGGGATTGTTCCATGGATGTAGATGAGAGGAGA 1734
Query 1419 TACATCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCCTATTGAG 1478
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1735 TACGTCTCTTCTGCAACCGAACATAGTGCAATAGGCAATCACATTGATCAGCTTATTGAG 1794
Query 1479 AAGAAGAACGAAGATGGATATTCATCGTCTGTCGGGAAATTTCAGCAATCTCTTCAACGG 1538
||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||
Sbjct 1795 AAGAAGAACGAAGATGGCTATTCATTATCCGTCGGGAAAATTCAGCAATCTCTTCAACGA 1854
Query 1539 GAAGCTGCTTTAACCAAATTCCGGATGAAGCGTAAGGACAGATGTTTTGAGAAAAAGGTT 1598
||||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||
Sbjct 1855 GAAGCCGCTTTAACCAAATTCCGAATGAAGCGAAAGGACAGATGTTATGAGAAAAAGGTT 1914
Query 1599 CGTTATGAGAGCCGTAAGAAACTGGCAGAGCAACGACCGCGAATCAAAGGCCAATTCGTT 1658
||||| |||||||| |||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 1915 CGTTACGAGAGCCGGAAGAAATTAGCAGAGCAACGACCACGAATCAAAGGCCAATTCGTT 1974
Query 1659 CGTCAAGTCCAATCCACACAAGCTCAACAGTGATCCAACAAATTGATATATTA 1711
||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1975 CGTCAAGTCCAATCCACACAAGCTCCATAGTGATCCAACAAATTGATATATTA 2027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5