BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942001

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator ...   213    8e-55


> AT5G24470.1 | Symbols: APRR5, PRR5 | pseudo-response regulator 
5 | chr5:8355951-8358873 REVERSE LENGTH=2257
Length=2257

 Score =  213 bits (115),  Expect = 8e-55
 Identities = 172/198 (87%), Gaps = 10/198 (5%)
 Strand=Plus/Plus

Query  124  ATGTGGCAAACGTGGCCACGTCAGCCAATTCTACTAGATATTTTT-CAAACCCCTTTACC  182
            ||||||||||||||||||||||||||||||||||||||||||||| |||| ||   ||| 
Sbjct  1    ATGTGGCAAACGTGGCCACGTCAGCCAATTCTACTAGATATTTTTTCAAATCCAAATACT  60

Query  183  CTTTTCACAACCGTTAGATCAAGGTCGGTTCACCGCCCAAATCCAATC-TCAACCGTTAA  241
            |||| |||||||||||||||| ||||||||| || ||||  | ||||| | |||||||||
Sbjct  61   CTTTCCACAACCGTTAGATCATGGTCGGTTCGCCACCCACTTTCAATCAT-AACCGTTAA  119

Query  242  AACATTCGCTAGATTTTTTCTAGATAtttttttttCCCTCACAATAATTTTATAGAA-GA  300
            |||||||||||||||||||||||||||||| ||||| | |||| || ||  |||||| ||
Sbjct  120  AACATTCGCTAGATTTTTTCTAGATATTTTCTTTTCTC-CACACTA-TT--ATAGAAAGA  175

Query  301  ATAAAGA-CTTTTATTTT  317
            ||||||  ||||| ||||
Sbjct  176  ATAAAGTTCTTTT-TTTT  192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5