BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942007
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24530.1 | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-d... 1663 0.0
> AT5G24530.1 | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr5:8378833-8383401
FORWARD LENGTH=1404
Length=1404
Score = 1663 bits (900), Expect = 0.0
Identities = 1009/1063 (95%), Gaps = 2/1063 (0%)
Strand=Plus/Plus
Query 2 TTCTTCTTCAATTTTCTGACATCAAATGGCGGGAAAGCTGATATCCACCGGTCTCCGTCA 61
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 107 TTCTTCTTCAATTTTCTGACATCAAATGGCGGCAAAGCTGATATCCACCGGTTTCCGTCA 166
Query 62 CACTACTTTGCCGGGAAACTATGTCCGGCCAATCTCCGACCGTCCACGTCTCTCTGAAGT 121
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TACTACTTTGCCGGAAAACTATGTCCGGCCAATCTCCGACCGTCCACGTCTCTCTGAAGT 226
Query 122 CTCTCAACTCGAAGATTTCCCTCTTATCGATCTTTCTTCCACTGATCGATCTGTTCTCGT 181
|||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |
Sbjct 227 CTCTCAACTCGAAGATTTCCCTCTCATCGATCTCTCTTCCACTGATCGATCTTTTCTCAT 286
Query 182 CCAACAAATCCACCAAGCTTGTGCTCGATTCGGGTTTTTTCAGGTCATAAATCACGGAGT 241
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 287 CCAACAAATCCACCAAGCTTGTGCCCGATTCGGATTTTTTCAGGTCATAAATCACGGAGT 346
Query 242 -AAGTAAACAAATAATAGATGAGATGGTGAGTGTTGCGCATGAGTTCTTTAGCATGTCTA 300
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 347 TAAC-AAACAAATAATAGATGAGATGGTGAGTGTTGCGCGTGAGTTCTTTAGCATGTCTA 405
Query 301 TGGAAGAAAAAATGAAGCTATATTCAGACGATCCAACGAAGACGACAAGATTATCAACGA 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 406 TGGAAGAAAAAATGAAGCTATATTCAGACGATCCAACGAAGACAACAAGATTATCGACGA 465
Query 361 GCTTCAATGTAAAGAAAGAAGAAGTCAACAATTGGAGAGACTATCTTAGACTCCATTGTC 420
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 466 GCTTCAATGTGAAGAAAGAAGAAGTCAACAATTGGAGAGACTATCTAAGACTCCATTGTT 525
Query 421 ATCCTATCCACAAGTATGTCCACGAGTGGCCTTCAAACCCTCCTTCTTTCAAGGAAATTG 480
|||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |
Sbjct 526 ATCCTATCCACAAGTATGTCAATGAGTGGCCGTCAAACCCTCCTTCTTTCAAGGAAATAG 585
Query 481 TAAGTAAATACAGTAGAGAAGTACGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAG 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 586 TAAGTAAATACAGTAGAGAAGTAAGAGAAGTGGGATTTAAAATAGAGGAATTAATATCAG 645
Query 541 AGAGCTTAGGCTTAGAAAAAGATTACATGAAGAAAGTGCTTGGTGAACAAGGTCAACACA 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGAGCTTAGGTTTAGAAAAAGATTACATGAAGAAAGTGCTTGGTGAACAAGGTCAACACA 705
Query 601 TGGCAGTCAATTATTATCCTCCATGTCCTGAACCTGAGCTCACTTATGGTTTACCTGCTC 660
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 706 TGGCAGTCAACTATTATCCTCCATGTCCTGAACCTGAGCTCACTTACGGTTTACCTGCTC 765
Query 661 ACACCGACCCAAACGCCCTAACCATTCTTCTCCAAGACACTACCGTTTGTGGTCTCCAGA 720
| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 766 ATACCGACCCAAACGCCCTAACCATTCTTCTTCAAGACACTACTGTTTGCGGTCTCCAGA 825
Query 721 TTTTGATCGACGGCCAATGGTTCGCCGTTAATCCACATCCTGATGCTTTTGTCATCAACA 780
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TCTTGATCGACGGTCAGTGGTTCGCCGTTAATCCACATCCTGATGCTTTTGTCATCAACA 885
Query 781 TTGGTGACCAGTTACAGGCATTAAGTAATGGAGTATACAAAAGTGTTTGGCATCGAGCTG 840
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 886 TAGGTGACCAGTTACAGGCATTAAGTAATGGAGTATACAAAAGTGTTTGGCATCGCGCTG 945
Query 841 TAACAAATACCGAAAATCCGAGACTATCAATTGCGTCGTTTCTATGCCCAGCTGACTGTG 900
||||||| || ||||||||||||||||| | || |||||||| ||||||||||||||||
Sbjct 946 TAACAAACACAGAAAATCCGAGACTATCGGTCGCATCGTTTCTGTGCCCAGCTGACTGTG 1005
Query 901 CTGTCATGAGCCCGGCCAAGCCCTTGTGGGAAGCCGAGGACAACGAAACAAAACCAATTT 960
|||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| | |
Sbjct 1006 CTGTCATGAGCCCGGCCAAGCCCTTGTGGGAAGCTGAGGACGATGAAACGAAACCAGTCT 1065
Query 961 ACAGAGACTTCACTTATGCAGAGTACTACAAGAAGTTTTGGAGTAGGAATCTGGACCAAG 1020
||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1066 ACAAAGATTTCACTTATGCAGAGTATTACAAGAAGTTTTGGAGTAGGAATCTGGACCAAG 1125
Query 1021 AACATTGCCTCGAGAATTTTCGAAACAACTAAGATACTTATAT 1063
||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1126 AACATTGCCTCGAGAATTTTCTAAACAACTAAGATACATATAT 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5