BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942009

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24550.1 | Symbols: BGLU32 | beta glucosidase 32 | chr5:8392...   516    7e-146


> AT5G24550.1 | Symbols: BGLU32 | beta glucosidase 32 | chr5:8392059-8395302 
REVERSE LENGTH=1605
Length=1605

 Score =  516 bits (279),  Expect = 7e-146
 Identities = 331/356 (93%), Gaps = 3/356 (1%)
 Strand=Plus/Plus

Query  1     TTATCGGAATAAATTACTACATGGCACGGA-TTGTCGCTCACGATCTTCACGTCGATCTT  59
             ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct  1013  TTATCGGAATAAATTACTACACGGCAC-GATTTGTCGCTCACGATCTTCACGTCGATCTT  1071

Query  60    TTCCGGCCTCGCTTCACAACCGACCAACATCTCCAATACAGATTGACAAATCGTAGCGGC  119
             | ||| ||||||||||| || |||||||| |||||||||| |||||||||||||||||||
Sbjct  1072  TCCCGACCTCGCTTCACGACTGACCAACACCTCCAATACAAATTGACAAATCGTAGCGGC  1131

Query  120   GACAACATCTCATCAGAATCGGATGGAACCAAAATTCTCTGGTCATATACGGAAGGCTTA  179
             ||| |||||||||||||||||||||| || |||||||||||||||||| |||||||| ||
Sbjct  1132  GACCACATCTCATCAGAATCGGATGGGACAAAAATTCTCTGGTCATATCCGGAAGGCCTA  1191

Query  180   CGAAAGCTTCTTAATTATATTAAAACTAAATATAACAATCCAACTATTTACATAACTGAA  239
             |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct  1192  CGAAAGCTTCTTAACTATATCAAAAATAAATATAACAATCCAACTATTTACATAACTGAA  1251

Query  240   AATGGTTTCGATGACTACGAAGATGGAACAGTGACACGTGATGAGATAATAGAAGACACA  299
             || |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||
Sbjct  1252  AACGGTTTCGATGACTACGAAAATGGATCAGTGACACGTGAAGAGATAATAGAAGACACA  1311

Query  300   AAGAGAATAAAGTACCACCAAAAACATCTTCGACAACTCCAGAAAGCGATCA-TGA  354
             ||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||
Sbjct  1312  AAGAGAATAGAGTACCACCAAAACCATCTTCAACAACTCCAGAAAGCGATCACTGA  1367



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5