BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942011

Length=322
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24560.1 | Symbols: AtPP2-B12, PP2-B12 | phloem protein 2-B1...   414    2e-115


> AT5G24560.1 | Symbols: AtPP2-B12, PP2-B12 | phloem protein 2-B12 
| chr5:8402205-8403266 FORWARD LENGTH=756
Length=756

 Score =  414 bits (224),  Expect = 2e-115
 Identities = 290/322 (90%), Gaps = 4/322 (1%)
 Strand=Plus/Plus

Query  1    TCCCTTCTCTCCAAAGCCAC-CATGTATGGAGCTTACATTGTTTTCAAAGAACAAGAAAT  59
            ||||||||||||||||||||  || ||  | |||||| ||||||||||||||||||||||
Sbjct  433  TCCCTTCTCTCCAAAGCCACTAAT-TACAGTGCTTACCTTGTTTTCAAAGAACAAGAAAT  491

Query  60   GGGATCCTTTGGATTTGAGTCTCTGCCTTTGGAGATGAGCTTTTGTTCTACAAGAACTGA  119
            |||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct  492  GGGATCCTTTGGATTTGAGTCTCTGCCTTTGGAGGTTAGCTTTCGTTCTACAAGAACTGA  551

Query  120  GGTTTATAATGATAGAAGAGTATTTCTTTTG-CAAGGAACGCAAGGGTGTAGAGAAGATG  178
             ||||||||  |||||||||| ||||||  | || ||||| |||| || |||||||||||
Sbjct  552  AGTTTATAACAATAGAAGAGTTTTTCTTAAGTCA-GGAACACAAGAGTCTAGAGAAGATG  610

Query  179  GGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTCCGATGATGAGGAGCTTGAAA  238
            |||||||||||||||||||||||||||||||||||||||  |||||||||||| | ||||
Sbjct  611  GGTGGTTGGAGATTGAACTTGGTGAATATTATGTTGGTTTTGATGATGAGGAGATCGAAA  670

Query  239  TGAGCATCTTGGAGACGAGAGAAGGCGGTTGGAAAGGCGGAATCATTGTGCAAGGGATCT  298
            ||||| | |||||||| ||||||||||||||||||||||||||||| || ||||||||| 
Sbjct  671  TGAGCGTATTGGAGACTAGAGAAGGCGGTTGGAAAGGCGGAATCATCGTTCAAGGGATCG  730

Query  299  AGATTAGGCCAAAAGAAGTGTT  320
            ||||||||||||||||| ||||
Sbjct  731  AGATTAGGCCAAAAGAATTGTT  752



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14979789202


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5