BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942012

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24570.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   375    9e-104


> AT5G24570.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8405681-8406132 
REVERSE LENGTH=452
Length=452

 Score =  375 bits (203),  Expect = 9e-104
 Identities = 291/329 (88%), Gaps = 23/329 (7%)
 Strand=Plus/Plus

Query  1    TCCTGTCTTGCAAGCAAATTAAGATCATACAAAGGTTTAGAGATTTTCTAACAAACGTCA  60
            ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct  12   TCCTGTCTTGCAAGCAAATTAAGATCATAAAAAGGTTTAGAGCTTTTCTAACAAACGTCA  71

Query  61   AAGCAAATCATCATTAGAGCAATCTTCAAATCGTCATGATAACAGTAGCCATCGCCGCTG  120
            ||||||||||||||  |||||||||||||||| |||||||||||||||||||||| || |
Sbjct  72   AAGCAAATCATCATCGGAGCAATCTTCAAATCATCATGATAACAGTAGCCATCGCAGCCG  131

Query  121  AGTTGCTTGAAGAATACACGGCGGCGCTAACACGCATCACCGCCACACTCCTCCCTCCAC  180
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  132  AGTTGCTTGAAGAATATACGGCGGCGCTCACACGCATCACCGCCACACTCCTCCCTCCAC  191

Query  181  CACCAACAAGTCGCCGTCGAAGTGTCCGAGCTG--ACT--CT-------T--CTCT-CC-  225
            |||| ||||||| |||||||||||||||||||   |||  |        |  |||| || 
Sbjct  192  CACCTACAAGTCACCGTCGAAGTGTCCGAGCTCCTACTAGCGGCCGAGCTGACTCTTCCT  251

Query  226  --C-TCGTAACGATAAC---TCATCATC-TCGCGCTCCAAATTACACCGCTTTTCTTTTA  278
              | |||||||||||||   |||||||| | ||||||||||||||||||||||||| |||
Sbjct  252  TGCCTCGTAACGATAACAACTCATCATCAT-GCGCTCCAAATTACACCGCTTTTCTCTTA  310

Query  279  AATTTCTGAGTATTTTTTGAATAGACGAA  307
            |||||||||||||||||| ||||||||||
Sbjct  311  AATTTCTGAGTATTTTTTTAATAGACGAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14225772967


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5