BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942013

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated p...   137    7e-32
  AT3G02230.1 | Symbols: RGP1, ATRGP1 | reversibly glycosylated p...   115    3e-25
  AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF04...   113    1e-24
  AT2G31580.1 | Symbols:  | tRNAHis guanylyltransferase | chr2:13...  76.8    1e-13


> AT5G15650.1 | Symbols: RGP2, ATRGP2 | reversibly glycosylated 
polypeptide 2 | chr5:5092157-5094494 FORWARD LENGTH=1530
Length=1530

 Score =  137 bits (74),  Expect = 7e-32
 Identities = 88/95 (93%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  252  GATTTGATTGGCCCAACAATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTAGC  311
            ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| | 
Sbjct  716  GATTTGATTGGCCCGGCTATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGT  775

Query  312  TACGATGACATGTGGGCTGGTTGGTGCATCAAGGT  346
            ||||| || ||||||||||||||||||||||||||
Sbjct  776  TACGACGATATGTGGGCTGGTTGGTGCATCAAGGT  810


> AT3G02230.1 | Symbols: RGP1, ATRGP1 | reversibly glycosylated 
polypeptide 1 | chr3:415393-417547 FORWARD LENGTH=1387
Length=1387

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 72/77 (94%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  270  ATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTAGCTACGATGACATGTGGGCT  329
            ||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct  758  ATGTACTTTGGTCTCATGGGTGATGGTCAGCCTATTGGTCGCTACGACGATATGTGGGCT  817

Query  330  GGTTGGTGCATCAAGGT  346
            || ||||| ||||||||
Sbjct  818  GGATGGTGTATCAAGGT  834


> AT5G40300.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr5:16110688-16112968 FORWARD LENGTH=1170
Length=1170

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 72/77 (94%), Gaps = 1/77 (1%)
 Strand=Plus/Plus

Query  31   TCCTGATTCACCAAGCGTCTCTTCAAATCCCCGATAGCCATGGATCTTCTCCTCACACGA  90
            |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  234  TCCTGATTCACCAACCCTCTCTTC-AATCCCCGATAGCCATGGATCTTCTCCTCACACGA  292

Query  91   TTATTCCGACTCCGTCT  107
            ||||||| ||||| |||
Sbjct  293  TTATTCCAACTCCTTCT  309


> AT2G31580.1 | Symbols:  | tRNAHis guanylyltransferase | chr2:13440909-13445851 
REVERSE LENGTH=1946
Length=1946

 Score = 76.8 bits (41),  Expect = 1e-13
 Identities = 43/44 (98%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  132  TCGGCGTTGTTTGAAAGGAAGCTGAGAATTGCAACTGCTTACAA  175
            ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  28   TCGGCGTTGTTAGAAAGGAAGCTGAGAATTGCAACTGCTTACAA  71



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19956296353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5