BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942017
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24600.1 | Symbols: | Protein of unknown function, DUF599 |... 1188 0.0
> AT5G24600.1 | Symbols: | Protein of unknown function, DUF599
| chr5:8421629-8423480 REVERSE LENGTH=1046
Length=1046
Score = 1188 bits (643), Expect = 0.0
Identities = 733/776 (94%), Gaps = 7/776 (1%)
Strand=Plus/Plus
Query 1 ATCAAATCTTTGATCTAAGATGATGAAGCGTGAGTATTTAGATTACACACTTGTGCCTTT 60
||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 118 ATC-AATCTTTGATCTAAGAAGATGAAGCGTGAGTATTTAGATTATACACTTGTGCCTTT 176
Query 61 AGGGCTTGCTTTGATGGTGTTTTATCATCTTTGGCTTCTCTACCGTATCATTCACCGTCC 120
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 177 AGGGCTTGCTTTGATGGTCTTTTATCATCTATGGCTTCTCTACCGTATCATCCACCGTCC 236
Query 121 ATCTTCGACTGTCGTTGGCCTCAACGCCTTCAATCGCCGCCTTTGGGTCCAAGCCATGAT 180
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTCTTCGACTGTTGTTGGCCTTAACGCCTTCAATCGCCGCCTTTGGGTCCAAGCCATGAT 296
Query 181 GGAGGACTCATCAAAAAATGGCGTTTTAGCGGTTCAAACGCTAAGGAACAACATAATGGC 240
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGAGGACTCATCCAAAAACGGCGTTTTAGCGGTTCAAACGCTAAGGAACAACATAATGGC 356
Query 241 GTCAACTCTATTGGCATCAACCGCAATAATGTTGTGTTCACTAATCGCGGTACTAATGAC 300
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 ATCAACTCTATTAGCATCAACCGCAATAATGTTATGTTCACTAATCGCGGTACTAATGAC 416
Query 301 AAGCGCCACAGGAGAGCGATCTGTCTGGTTTGTGTTTGGTGACAAAAGTGACCGAGCCTT 360
||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 417 TAGCGCTACAGGAGAGCGATCAGTCTGGTTTGTGTTTGGAGACAAAAGCGACCGAGCCTT 476
Query 361 CTCGCTCAAGTTCTTCGCAATCCTCGTGTGTTTCCTAGTCGCGTTTCTCCTCAATGTGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 477 CTCGCTCAAGTTCTTCGCAATCCTCGTGTGTTTCCTAGTCGCGTTTCTCCTCAATGTCCA 536
Query 421 ATCAATTCGTTATTACAGCCATGCTAGCATCCTCATCAATGTCCCCTTTAAACAGCTGAT 480
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 537 ATCAATTCGTTATTACAGCCATGCAAGCATCCTTATCAATGTCCCCTTTAAACAGCTCAT 596
Query 481 GGCTGTTTCTTCAGGCGGTCGTGGTAACGGTAGTCTTATGATAAACCAAGATTATGTGGC 540
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 597 GGCTGTTTCTTCAGGTGGTCGTGGTAATGGTAGTCTTATGATAAACCAAGATTATGTGGC 656
Query 541 TGCAACGGTTAACCGTGGGAGTTACTTCTGGTCGTTAGGACTAAGAGCATTCTACTTCTC 600
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 657 TGCAACGGTTAACCGTGGGAGTTACTTCTGGTCGTTAGGACTACGAGCGTTCTACTTCTC 716
Query 601 ATCGCCTTTGTTCCTTTGGATCTTCGGTCCCATCCCCATGTTCATCACTTGTTGTGTTCT 660
|||||||| ||||| |||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct 717 CTCGCCTTTATTCCTATGGATCTTTGGTCCCATCCCAATGTTCATAACTTGTTGCGTTCT 776
Query 661 TGTTTGTTCGTTGTACTTTCTTGATTTAACGTTTGACTCGATGAAATGTAGCGTTGGAGC 720
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTTTGTTCGTTGTACTTCCTTGATTTAACGTTTGACTCGATGAAATGTAGCGTTGGAGC 836
Query 721 CGCAGACGCGGAGGAGCCCGAGGTCAGAAGCTTA----A-A-TGTTTAGTAGTTTT 770
|||||||||||||||||||||| | ||||||||| | | ||||||||||||||
Sbjct 837 CGCAGACGCGGAGGAGCCCGAGATTAGAAGCTTAGCTCAGAATGTTTAGTAGTTTT 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5