BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942023

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24655.1 | Symbols: LSU4 | response to low sulfur 4 | chr5:8...   492    9e-139
  AT5G24660.1 | Symbols: LSU2 | response to low sulfur 2 | chr5:8...   355    1e-97 


> AT5G24655.1 | Symbols: LSU4 | response to low sulfur 4 | chr5:8440694-8441218 
REVERSE LENGTH=525
Length=525

 Score =  492 bits (266),  Expect = 9e-139
 Identities = 302/320 (94%), Gaps = 0/320 (0%)
 Strand=Plus/Plus

Query  1    CATCAAATAAAAAGAGAGGAAATGGGGAAAGGAGGAAACTATGTGATGGTGGCGGCTTCG  60
            ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   CATAAAATAAAAAGAGAGAAAATGGGAAAAGGAGGAAACTATGTGATGGTGGCGGCTTCG  120

Query  61   GAGGTGGAGGAGCTACGACAGAAGAACGGAGAGATGGAAAAAGCGGTGGAGGAGATGAGG  120
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  GAGGTAGAGGAGCTACGACAGAAGAACGGAGAGATGGAGAAAGCGGTGGAGGAGATGAGG  180

Query  121  AAAGAGATGGTGCAGTTGTGGCGGCGGACGCAGGTGGCTGAGGAGGCTGAGGAGCATCTA  180
            ||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||| 
Sbjct  181  AAAGAGATGTTGCAGTTGTGGAGGAGGACACAGGTGGCTGAGGAGGCTGAGGAGCATCTT  240

Query  181  TGCTCTCAGCTAGCCGAGCTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACTCT  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  241  TGCTCTCAGCTTGCCGAGCTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACACT  300

Query  241  CGCATCATCTTCCTTACGAACGAGCTCTCTCGTTTCTCCTCCGATTCCGCCTCTCCCTAG  300
            ||||||||||| || || ||| |||||||||||||||||||||| || ||||||||||||
Sbjct  301  CGCATCATCTTTCTAACAAACCAGCTCTCTCGTTTCTCCTCCGACTCTGCCTCTCCCTAG  360

Query  301  AATAGATATTTGTGTAAAGG  320
            ||||||||||||||||||||
Sbjct  361  AATAGATATTTGTGTAAAGG  380


> AT5G24660.1 | Symbols: LSU2 | response to low sulfur 2 | chr5:8443279-8443834 
REVERSE LENGTH=556
Length=556

 Score =  355 bits (192),  Expect = 1e-97
 Identities = 251/280 (90%), Gaps = 2/280 (1%)
 Strand=Plus/Plus

Query  20   AAATGGGGAAAGGAGGAAACTATGTGATGGTGGCGGCTTCGGAGGTGGAGGAGCTACGAC  79
            ||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||
Sbjct  77   AAATGGGGAAAGGAGGAAACTATGTGACGGTGGCGGCTTCCGAAGTGGACGAGCTACGAC  136

Query  80   AGAAGAACGGAGAGATGGAAAAAGCGGTGGAGGAGATGAGGAAAGAGATGGTGCAGTTGT  139
             |||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||
Sbjct  137  GGAAGAACGGAGAGATGGAGAAAGCTGTGGAGGAGATGAAGAAAGAGATGTTGCAGTTGT  196

Query  140  GGCGGCGGACGCAGGTGGCTGAGGAGGCTGAGGAGCATCTATGCTCTCAGCTAGCCGAGC  199
            |||||||||| |||||||| || || || ||||||| ||| ||||| |||||||||||||
Sbjct  197  GGCGGCGGACACAGGTGGCGGAAGAAGCGGAGGAGCGTCTCTGCTCACAGCTAGCCGAGC  256

Query  200  TTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACTCTCGCATCATCTTCCTTACGA  259
            ||||||| ||||||||||||||||||||||||||||||||||| |||||||| || | ||
Sbjct  257  TTGAAGCAGAATCTTTAGACCAGGCTCGTGATTACCACTCTCGTATCATCTTTCTCATGA  316

Query  260  ACGAGCTCTCTCGT-TTCTCCTCCGATTCCGCCTCTCCCT  298
            |||||||||||||| || || || || || |||||| |||
Sbjct  317  ACGAGCTCTCTCGTCTT-TCTTCAGACTCTGCCTCTGCCT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14879253704


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5