BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942024

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24660.1 | Symbols: LSU2 | response to low sulfur 2 | chr5:8...   460    3e-129
  AT5G24655.1 | Symbols: LSU4 | response to low sulfur 4 | chr5:8...   348    2e-95 


> AT5G24660.1 | Symbols: LSU2 | response to low sulfur 2 | chr5:8443279-8443834 
REVERSE LENGTH=556
Length=556

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 287/305 (94%), Gaps = 3/305 (1%)
 Strand=Plus/Plus

Query  14   TCTTTAAAATGGGGAAAGGAGGAAACTATGTGACGTTGGCGGCTTCGGAGGTGGAGGAGC  73
            |||| |||||||||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct  71   TCTTAAAAATGGGGAAAGGAGGAAACTATGTGACGGTGGCGGCTTCCGAAGTGGACGAGC  130

Query  74   TACGACGGAAGAACGGAGAGATGGAAAAAGCAGTGGAGGACATGAGGAAAGAGATGTTGC  133
            ||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||||||
Sbjct  131  TACGACGGAAGAACGGAGAGATGGAGAAAGCTGTGGAGGAGATGAAGAAAGAGATGTTGC  190

Query  134  AGTTGTGGCGGCGGACACAGGTGGCGGAGGAAGCGGAGGAGCGTCTCTGCTCTCAGCTAG  193
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  191  AGTTGTGGCGGCGGACACAGGTGGCGGAAGAAGCGGAGGAGCGTCTCTGCTCACAGCTAG  250

Query  194  CCGAGCTTGAAGCTGAATCTTTAGACCAGGCTCGTGATTACCACTTTCGTATCAT-TGTC  252
            ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | | 
Sbjct  251  CCGAGCTTGAAGCAGAATCTTTAGACCAGGCTCGTGATTACCACTCTCGTATCATCT-TT  309

Query  253  CTCATGAACGAGCTCTCTCGTCTTTCTTCAGACTCTGCCTCTGCCTCTCCCTAGAAT-AG  311
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  310  CTCATGAACGAGCTCTCTCGTCTTTCTTCAGACTCTGCCTCTGCCTCTCCGTAGAATTAG  369

Query  312  ATAGA  316
            |||||
Sbjct  370  ATAGA  374


> AT5G24655.1 | Symbols: LSU4 | response to low sulfur 4 | chr5:8440694-8441218 
REVERSE LENGTH=525
Length=525

 Score =  348 bits (188),  Expect = 2e-95
 Identities = 262/297 (88%), Gaps = 8/297 (3%)
 Strand=Plus/Plus

Query  19   AAAATGGGGAAAGGAGGAAACTATGTGACGTTGGCGGCTTCGGAGGTGGAGGAGCTACGA  78
            |||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct  79   AAAATGGGAAAAGGAGGAAACTATGTGATGGTGGCGGCTTCGGAGGTAGAGGAGCTACGA  138

Query  79   CGGAAGAACGGAGAGATGGAAAAAGCAGTGGAGGACATGAGGAAAGAGATGTTGCAGTTG  138
            | |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct  139  CAGAAGAACGGAGAGATGGAGAAAGCGGTGGAGGAGATGAGGAAAGAGATGTTGCAGTTG  198

Query  139  TGGCGGCGGACACAGGTGGCGGAGGAAGCGGAGGAGCGTCTCTGCTCTCAGCTAGCCGAG  198
            ||| || ||||||||||||| ||||| || ||||||| ||| ||||||||||| ||||||
Sbjct  199  TGGAGGAGGACACAGGTGGCTGAGGAGGCTGAGGAGCATCTTTGCTCTCAGCTTGCCGAG  258

Query  199  CTTGAAGCTGAATCTTTAGACCAGGCTCGTGATTACCACTTTCGTATCAT-TGTCCTCAT  257
            |||||||| ||||||||||||||||||||||||||||||  ||| ||||| | || | | 
Sbjct  259  CTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACACTCGCATCATCTTTC-TAAC  317

Query  258  GAACGAGCTCTCTCGTCTTTCTTCAGACTCTGCCTCTGCCTCTCCCTAGAATAGATA  314
             ||| ||||||||||| || || |   ||| | ||||||||||||||||||||||||
Sbjct  318  AAACCAGCTCTCTCGT-TT-CT-C---CTCCGACTCTGCCTCTCCCTAGAATAGATA  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5