BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942036
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 564 4e-160
> AT5G06330.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr5:1934739-1935644
REVERSE LENGTH=906
Length=906
Score = 564 bits (305), Expect = 4e-160
Identities = 496/584 (85%), Gaps = 30/584 (5%)
Strand=Plus/Plus
Query 34 ATGACCTCAAAAGACTGTGGCGCTCACCACAGCCACTCATCATCATGCAACCGCCGCTGT 93
||||||||||||||||||||| ||||| ||||||| | |||||||||||||| |
Sbjct 61 ATGACCTCAAAAGACTGTGGCTCTCACGACAGCCA--C-TCATCATGCAACCG-TAAAAT 116
Query 94 -GTAATCTGGCCAATAAT-AATAATCCTCTTCTTAATCTTTCTCGTAATTTTCCTACTTT 151
|| |||||| | || || |||||||||| |||||||| || |||||||| ||||| |||
Sbjct 117 AGTGATCTGGACGAT-ATCAATAATCCTCCTCTTAATCCTTGTCGTAATTCTCCTAGTTT 175
Query 152 GGGCAATCCTTCATCCATCAAAACCACGCTTTATCCTTCGAGACGCCACCGTCGTCAACT 211
||||||||||||| ||||| ||||||||||| |||| | ||||||||||||| ||||||
Sbjct 176 GGGCAATCCTTCAACCATCGAAACCACGCTTCGTCCTCCAAGACGCCACCGTCTTCAACT 235
Query 212 TCAACGTCTCCGGCAATCCACCG---CACCTCACCTCAAGTTTCAAAATCACTCTCTCCT 268
||||||||||||||||||||||| | ||||||||||| |||| || ||||||||||||
Sbjct 236 TCAACGTCTCCGGCAATCCACCGAACCTCCTCACCTCAAATTTCCAATTCACTCTCTCCT 295
Query 269 CTCGTAACCCTAACGACAAGATCGGAATCTACTACGACCGTCTTGACGTCTACGCTTCTT 328
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 CTCGTAACCCTAACGACAAGATCGGTATCTACTACGACCGTCTTGACGTCTACGCTTCTT 355
Query 329 ACGGGAACCAACAGATCACTTCT-CCGACTGCCATGCCGACGACTTATCAAGGACATAAA 387
|| ||| |||||||||||||| | |||| | |||||| || |||||||||||||| |||
Sbjct 356 ACCGGAGCCAACAGATCACTT-TGCCGAGTCCCATGCTTACCACTTATCAAGGACACAAA 414
Query 388 GAAGTCAAAGATTGGTCTCCTTTCGTCGGTGGAAACTCCATTCACC-TCGCTCCGTACAA 446
|||||||| | |||||||||||||||||||||| ||||| ||| | | |||||||||||
Sbjct 415 GAAGTCAACGTTTGGTCTCCTTTCGTCGGTGGATACTCCGTTC-CTGTGGCTCCGTACAA 473
Query 447 TGCCTTGAATCTCGA---G--C-A-----G-GGCACGATCATGTTGATGCTTCATCTTAA 494
|| || ||||||| | | | | ||| |||||||||||||||||||||| |
Sbjct 474 CGCTTTCTATCTCGATCAGGACCATTCAAGTGGCGCGATCATGTTGATGCTTCATCTCGA 533
Query 495 CGG-CAGAGTTCGTTGGAAATTTGG-TACCTTCATCACCGGAAAATATCATCTCTACGTT 552
||| | |||||||||||||| | || | |||||||||||||||||||||||||| |||||
Sbjct 534 CGGTC-GAGTTCGTTGGAAAGTCGGAT-CCTTCATCACCGGAAAATATCATCTCCACGTT 591
Query 553 AGATGTCGGGCGTTTATCAACATCGGTAATAGTGCTTCCGGAGT 596
||||||| ||| |||||||| |||| | ||||||| |||||||
Sbjct 592 AGATGTCATGCGCTTATCAACTTCGGGAGTAGTGCTGCCGGAGT 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5