BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942037
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05365.1 | Symbols: | Heavy metal transport/detoxification ... 357 2e-98
> AT5G05365.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:1590036-1590861 FORWARD LENGTH=512
Length=512
Score = 357 bits (193), Expect = 2e-98
Identities = 210/218 (96%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 3 TTTATTCCACAAAAGTTTCTGTGATGGCTAATGTTGTGGAGCTGAAAGTGAATTTGCATT 62
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 67 TTTATTTCACAAAAGTTTCTGTGATGGCTAATGTTGTGGAGCTAAAAGTGAATTTGCATT 126
Query 63 GCGACGAATGCATCAGGAAAATACTTAAAGCCATCAAGAAAATAGAAGATATAG-AGACA 121
| || |||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 127 GTGATGAATGCATCAGGAAAATACTTAAAGCCATCAAGAAAATTGAAGATATAGAAG-CA 185
Query 122 TACGATGTGGACACACAGCTCAACAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TACGATGTGGACACACAGCTCAACAAAGTGACAGTCACAGGGAATGTAACAGAGGAACAA 245
Query 182 GTGATTAGGGTTCTTTAAAAGGTGAGGAAAGCTGCTGT 219
||||||||||||||| ||||||||||||||||||||||
Sbjct 246 GTGATTAGGGTTCTTCAAAAGGTGAGGAAAGCTGCTGT 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5