BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942039
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24800.1 | Symbols: ATBZIP9, BZO2H2, BZIP9 | basic leucine z... 1399 0.0
> AT5G24800.1 | Symbols: ATBZIP9, BZO2H2, BZIP9 | basic leucine
zipper 9 | chr5:8515200-8516669 FORWARD LENGTH=1021
Length=1021
Score = 1399 bits (757), Expect = 0.0
Identities = 836/874 (96%), Gaps = 6/874 (1%)
Strand=Plus/Plus
Query 4 GTGTTCACATAC-AACAAAATGGATAATCACGCAGCTAAAGACATTGGTATGAAGAGAAG 62
|||||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 41 GTGTTCACATTCAAAGAAAATGGATAATCACACAGCTAAAGACATTGGTATGAAGAGAAG 100
Query 63 TGCTTCTGAGTTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGA 122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 TGCTTCTGAGCTGGCTCTACAAGAGTATCTCACTACAAGCCCTCTAGACCCTTGTTTCGA 160
Query 123 TCTCATAAACCGGGA-T--ACTTGTGAGTTAAGAGATATTCTTTTGTGGTCTGAGGGCTT 179
||||| |||||||| | ||||||||||||||||||| |||||||||||||||||| ||
Sbjct 161 CCTCATGAACCGGGATTACACTTGTGAGTTAAGAGATAGTCTTTTGTGGTCTGAGGGATT 220
Query 180 GATTCCGGCTGGAACTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGA 239
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GTTTCCGGCTGGACCTTTTCGCGATGCACAGTCCTCAATCTGCGAGAATCTGTCAGCTGA 280
Query 240 TAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGA-GAGGGAGTTAGGAGAACCGTAAGTG 298
|||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 281 TAGTCCAGTGTCAGCCAATAAACCTGAGGTAAGAGGA-GGAGTTAGGAGAACCACAAGTG 339
Query 299 GATCTTCTCATGTTAACTCTGATGAAGAAGATGCAGAGACAGAAGCTGGCCAATCTGAAA 358
||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||
Sbjct 340 GATCTTCTCATGTTAACTCTGATGACGAAGATGCCGAGACAGAAGCAGGGCAATCTGAAA 399
Query 359 TGACTAATGATCCCAATGATCTAAAACGTATTAGAAGGATGAATTCAAACAGAGAATCAG 418
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 400 TGACTAATGATCCCAATGATCTGAAACGTATTAGAAGGATGAACTCAAACAGGGAATCAG 459
Query 419 CAAAGCGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATT 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 CAAAGAGGTCGAGGAGAAGGAAGCAAGAGTACTTGGTAGATCTTGAGACTCAGGTTGATT 519
Query 479 CTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTCC 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 520 CTTTGAAAGGCGATAACTCAACACTGTACAAGCAGCTCATAGACGCAACACAACAGTTTC 579
Query 539 GTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GTAGCGCTGGAACAAATAACAGAGTTCTCAAATCAGATGTTGAAACTCTGAGAGTCAAGG 639
Query 599 TGAAACTAGCAGAAGATTTGGTAGCTAGAGGGTCCCTCACTAGCAGCTTGAACCAACTTC 658
||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 640 TGAAACTAGCAGAAGATTTGGTAGCGAGAGGGTCACTCACTAGCAGCTTGAATCAACTTC 699
Query 659 TACAAACTCATCTAAGTCCACCATCACACTCCATCAACAGTTTGCACTACACAGGAAATA 718
|||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 700 TACAAACTCATCTAAGTCCACCATCACACTCCATCAGCAGTCTGCACTACACGGGAAATA 759
Query 719 CCTCACCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTG 778
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CCTCGCCCGCCATTACAGTCCACAGTGACCAATCTTTGTTCCCTGGAATGACACTTTCTG 819
Query 779 GGCAGAACTCAAGCTCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAG 838
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 GACAGAACTCAAGCCCTGGACTTGGTAATGTATCCAGTGAAGCTGTTAGCTGCGTCTCAG 879
Query 839 ATATCTGGCCATGACTCTCTTTCTTCATAACATG 872
| ||||||||||||||||||||||||| ||||||
Sbjct 880 ACATCTGGCCATGACTCTCTTTCTTCAGAACATG 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42548322509
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5