BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942046

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24860.1 | Symbols: FPF1, ATFPF1 | flowering promoting facto...   610    3e-174


> AT5G24860.1 | Symbols: FPF1, ATFPF1 | flowering promoting factor 
1 | chr5:8541778-8542449 FORWARD LENGTH=672
Length=672

 Score =  610 bits (330),  Expect = 3e-174
 Identities = 356/368 (97%), Gaps = 3/368 (1%)
 Strand=Plus/Plus

Query  1    AAGGAGAGGAAGAAGAAGATCATGTCAGGCGTGTGGGTGTTCAAGAACGGAGTGATAAGA  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  24   AAGGAGAGGAAGAAGAAGATCATGTCAGGCGTGTGGGTCTTCAAGAACGGAGTGATAAGA  83

Query  61   CTTGTGGAGAACCCTGACCAGTCAGGATCCGACACACACAGCCGAAGGAAAGTGATGGTC  120
            ||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct  84   CTTGTGGAGAACCCTAACCAGTCAGGATCCGACACACAGAACCGAAGGAAAGTGATGGTC  143

Query  121  TATTTACCGACAGGAGAAGTTGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGT  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  144  TATTTACCGACAGGAGAAGTGGTCTCATCTTACTCGACGCTCGAGCAGATCCTCCAGAGT  203

Query  181  CTTGGATGGGAGAGGTACTTT---GGCGGCGACACAGATCTCCTCCAATTCCACAAACGC  237
            |||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||
Sbjct  204  CTTGGATGGGAGAGATACTTTGGCGGCGGCGACACAGATCTCCTCCAATTCCACAAACGC  263

Query  238  TCCTCCATTGATCTCATCTCTCTTCCTAGAGATTTCACCAAATTCAACTCCGTTTACATG  297
            ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct  264  TCCTCCATTGATCTCATTTCCCTGCCTAGAGATTTCACCAAATTCAACTCCGTTTACATG  323

Query  298  TACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGATTCTTC  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  TACGATATCGTCGTCAAGAACCCTAATTACTTCCATGTCCGAGACTCCCATTGATTCTTC  383

Query  358  TTTTGTGT  365
            ||||||||
Sbjct  384  TTTTGTGT  391



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5