BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942048

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24879.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   206    1e-52


> AT5G24879.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8552491-8552604 
REVERSE LENGTH=114
Length=114

 Score =  206 bits (111),  Expect = 1e-52
 Identities = 113/114 (99%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  145  ATGAGAATCGATTACTTATGTGATTGTAAAACGGAGCTTAAATCTCGCAATTTCTTGGGT  204
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGAGAATCGATTACTTATGTGATTGTAAAACGGAGCTTAAATCTCGCAATTGCTTGGGT  60

Query  205  GGTAATGGTGGTGGAGGCCATCAATCTCCTAACAAATTTAAAATCAAAAACTAA  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTAATGGTGGTGGAGGCCATCAATCTCCTAACAAATTTAAAATCAAAAACTAA  114



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5