BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942050

Length=490
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   732    0.0  


> AT5G24890.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 
plant structures; EXPRESSED DURING: 13 growth stages; BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); 
Has 1807 Blast hits to 1807 proteins in 277 
species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; 
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: 
NCBI BLink). | chr5:8558191-8559406 REVERSE LENGTH=1123
Length=1123

 Score =  732 bits (396),  Expect = 0.0
 Identities = 437/455 (96%), Gaps = 9/455 (2%)
 Strand=Plus/Plus

Query  1    GGCTTCGAGGGTTAGCTTCAATGAGCTCTCTTGAAGATTCTCTTCCCTCAAAGAGAGGGT  60
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  506  GGCTTCGAGGGTTAGCTTCAATGAGCTCTCTTGAAGATTCTCTACCCTCAAAGAGAGGGT  565

Query  61   TATCCAATCATTACAAAGGGAAATCAAAATCATTTGGGAATTTAGGAGAGATTGGAAGTG  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  566  TATCGAATCATTACAAAGGGAAATCAAAATCATTTGGGAATTTAGGAGAGATTGGAAGTG  625

Query  121  TTAAAGAAGTAGCAAAACAAGAGAATCCATTGAATAAAAGAAGAAGAGTACAGATCTGTA  180
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  626  TTAAAGAAGTAGCGAAACAAGAGAATCCATTGAATAAAAGAAGAAGATTACAGATCTGTA  685

Query  181  ATAAATTAGCAAGAAAATCGTTTTATTCATGGCAAAACCCTAAATCTATGCCTCTGTTAC  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  686  ATAAATTAGCAAGAAAATCGTTTTATTCATGGCAAAACCCTAAATCTATGCCTCTGTTAC  745

Query  241  CAGTAAACGAAgatgaagatgatgatgatgatgatgatgatgaAGAAGATCTGAAATCTG  300
            ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct  746  CAGTAAACGAAGATGAAGACGATGATGATGAAGATGACGATGAAGAAGATCTGAAATCTG  805

Query  301  GGTTTGATGAGAATAAATCATCGAGTGATGAAGAAGGAGGAGGTAGAGTGAAGAAAGTTG  360
            |||||||||||||||||||||||||||||||||||||||    | ||   | ||||||||
Sbjct  806  GGTTTGATGAGAATAAATCATCGAGTGATGAAGAAGGAG----T-GA---A-GAAAGTTG  856

Query  361  TTGTAAGGAAAGGATCTTTCAAGAACAGAGCTTACAAGTCTCGGAGTTGTTTTGCACTTT  420
            |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct  857  TTGTAAGGAAAGGATCTTTCAAGAACAGAGCTTATAAGTCTAGGAGTTGTTTTGCACTTT  916

Query  421  CAGATCTGATTGAGGAAGAAgatgatgatgatgat  455
            |||||||||||||||||||||||||||||||||||
Sbjct  917  CAGATCTGATTGAGGAAGAAGATGATGATGATGAT  951



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23358878355


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5