BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942059
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25030.1 | Symbols: | Domain of unknown function (DUF2431) ... 870 0.0
> AT5G25030.1 | Symbols: | Domain of unknown function (DUF2431)
| chr5:8620083-8620991 REVERSE LENGTH=582
Length=582
Score = 870 bits (471), Expect = 0.0
Identities = 548/585 (94%), Gaps = 6/585 (1%)
Strand=Plus/Plus
Query 22 ATGGATGTTCACGAATCTAGAA-GTCTAAGTCGATATAGCAACGAGCAAAAAATACTCGT 80
||||||||||| ||||||| || || |||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGATGTTCAGGAATCTAAAAGGT-TAAGTCGATATAGCAATGAGCAAAAAATACTCGT 59
Query 81 GGTGGGAGAAGGAGAGTTTTCATTTTCTTTGTCTTTAGCCAAAGCATTTGGTTCTGCCAC 140
||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 60 GGTCGGAGAAGGAGAGTTTTCATTTTCTTTGTCTTTAGCAAAAGCCTTGGGTTCTGCCAC 119
Query 141 CAACATCACTGCAATATCGCTTGATATTCGAGAGGAGCTAGGGCGTAACTACAACAATGG 200
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 120 CAACATCACTGCAATATCGCTTGATATTCGAGAGGATCTAGGGCGTAATTACAACAATGG 179
Query 201 AAAAGTGAACGTGGAAGAGTTGGAGAGACTTGGATGCACGGTGGTCCGCGGTGTTAACGT 260
||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 180 AAAAGGGAACGTGGAAGAGTTGGAGAGACTTGGTTGCACTGTGGTCCGTGGTGTTAATGT 239
Query 261 ACACTCCATGGCCTCAGACGATCGCTTAGCTCATTACGACATAATCATCTTTAATTTTCC 320
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACACTCCATGAAATCAGACGATCGCTTAGCTCATTACGACATAATCATCTTTAATTTTCC 299
Query 321 TCATGCAGGGAAACGTGATAAGGTATTTGGAGGATTTATGGAGAGTGCGAGAGAGATGAT 380
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TCATGCAGGGAAACGCAATAAGGTATTTGGAGGATTTATGGAGAGTGCAAGAGAGATGAT 359
Query 381 GAAAGACGAAGATGGAGAGATTCATATCACTCTAAACACACTAC-CTCCATTTAACAAGT 439
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 360 GAAAGACGAAGATGGAGAGATTCATATCACTCTAAACACACTAAAC-CCATTTAACAAGT 418
Query 440 GGGATATAAAGGCTCTAGCTGAAGAAAAG-GGTTTGCGTTTAATCCAGAGAATGCAATTC 498
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 419 GGGATTTAAAGGCTCTAGCTGAAGAAA-GTGGTTTGCGTTTAATCCAGAGAATGCAATTC 477
Query 499 ACTAAATGGGCATTCCCAACTTACTCCAACAAGAGAGGAAGTGGAAGTAACTATGATTTT 558
| ||||||||||||||||| || ||||||||| |||| |||||||||||| | |||||||
Sbjct 478 ATTAAATGGGCATTCCCAAGTTCCTCCAACAAAAGAGAAAGTGGAAGTAATTGTGATTTT 537
Query 559 ATCTATCCTATCGGATCAGCTATTACTTACATGTTTAAGAAATAG 603
|| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 ATATATCCTATCGGATCAGCTATCACTTACATGTTTAAGAAATAG 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5