BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942061
Length=2887
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containin... 4824 0.0
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containin... 2449 0.0
> AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634074-8640217 REVERSE LENGTH=3219
Length=3219
Score = 4824 bits (2612), Expect = 0.0
Identities = 2792/2879 (97%), Gaps = 11/2879 (0%)
Strand=Plus/Plus
Query 4 AGTTGGATGCTAAAACTATGAGTTCATTCTCGATCACTCgaaagaaaacgccattccaga 63
||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 217 AGTTGGATGCTGAAACAATGAGTTCATTCTCGATCACTCGTAAGAAAACACCATTCCAGA 276
Query 64 aacacagagaagaagaagaagctcggaagaagaaagCGGAGGATGAAACGGCTCGTTTGT 123
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 277 AACACAGAGAAGAAGAAGAAGCTAGGAAGAAGAAAGCAGAGGATGAAACGGCTCGTTTGT 336
Query 124 ATCAAGAATTCGTGGAATCGTTTCAAGGAGATAATGCAACTACTAAGACTTTTGTTCGAG 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 337 ATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTACTAAGACTTTTGTTCGAG 396
Query 184 GTGGGACGATAAATCCTGGTGACAAGCCTAAGGTTGATTCTGAAGGTGAAAAGTCCGAAG 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 397 GTGGGACGATAAATCCTGGTGACAAGCCTAAGGTTGATTCTGAAGGTGAAAAGTCCAAAG 456
Query 244 ATGGGGGTTCGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCTCTTTCCTTCCACCACCAC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 ATGGGGGTTCGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCTCTTTCCTTCCACCACCAC 516
Query 304 TGGCATCTaagggtaaagaaccggagaagaagagggaggaggagaggcctagggagagag 363
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 517 TGGCATCCAAGGGTAAAGAACCGGAGAAGAAGAGGGAGGAGGAGAGGCCTAGGGAAAGAG 576
Query 364 aaaagggaaagaCTCGAAATATAGATCATTTCATGGAGGAGTTGAAACGTGAACAAGAAA 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 577 AAAAGGGAAAGACTCGAAATATAGATAATTTCATGGAGGAGTTGAAACGTGAACAAGAAA 636
Query 424 TGAGAGAGAGACGAAACCAGGATCGTGACCGTCAGGGTGATAACTCGCCATCTAGCCGCT 483
||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 637 TGAGAGAAAGACGAAACCAGGATCGTGACCGTCAGGGCGATAGCTCGCCATCTAGCCGCT 696
Query 484 TTGATGAGCTACCTGATGATTTTGATCCCAGTGGAAGGCCAGGATCGTTTGACGATGGTG 543
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 697 TTGATGAGCTACCTGATGATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTG 756
Query 544 ACCCACAAACTACAAATCTATATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCC 603
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 757 ACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCC 816
Query 604 TTCTGCGCACTTTCGGAAGATTTGGACCCATAGCTAGTGTCAAGATTATGTGGCCAAGAA 663
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 817 TTCTGCGCACTTTCGGAAGATTTGGGCCCATAGCTAGTGTCAAGATTATGTGGCCAAGAA 876
Query 664 CAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCTG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCTG 936
Query 724 ATGGACAAGCTGCAAAAGATGAAATGCAAGGGATCATTGTGTATGAGTATGAACTGAAAA 783
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 937 ATGGACAAGCTGCAAAAGATGAAATGCAAGGGATCATCGTGTACGAGTATGAACTGAAAA 996
Query 784 TTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCTCCACCTGGAC 843
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 997 TTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCACCACCTGGAC 1056
Query 844 ATATGGCTATTCGGAGTAAAGAGGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCAC 903
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 ATATGGCTATTCGGAGTAAGGAGGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCAC 1116
Query 904 CAATTATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAACGTTCCGG 963
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1117 CGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAATGTTCCGG 1176
Query 964 ATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATGTGATTGATACATTGGCTC 1023
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1177 ATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATGTCATTGATACATTGGCAC 1236
Query 1024 TCTATGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGGGCCGTGGGA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 TCTATGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGGGCCGTGGGA 1296
Query 1084 ATCCACTGTTTAAGTTTTTGTTCGAGCTTGGCTCAAAGGAGCATACTTACTACGTCTGGA 1143
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 ATCCACTGTTCAAGTTTATGTTCGAGCTTGGCTCAAAGGAGCATACTTACTACGTCTGGA 1356
Query 1144 GACTCTATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGGACAGAGCCGTATATCA 1203
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1357 GACTATATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGAACAGAGCCGTATATCA 1416
Query 1204 TGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGACCCAGGAGC 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGACCCAGGAGC 1476
Query 1264 ACGAAAAAGAGTCTGCCAGCACATATGCAGCGGGAAGAACCAGGCGTGCGGAAGTTGAGA 1323
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1477 ACGAAAAAGAGTCTGCCAGCACTTATGCGGCGGGAAGAACCAGACGTGCGGAAGTTGAGA 1536
Query 1324 GGACTCTGACCGACCCTCAGAGGGATGAGTACGAGGACATGTTGCGTGCTCTTACTTTAG 1383
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1537 GGACTCTGACCGATCCTCAGAGGGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAG 1596
Query 1384 AAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAG 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 AAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAG 1656
Query 1444 AGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAG 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 AGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAG 1716
Query 1504 TTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGTGC-CAGTGTTAAAAAT 1562
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1717 TTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGTGCAC-GTGTTAAAAAT 1775
Query 1563 GCATCTGCATACCGAACCAAATTCGAAGCAACTCTACCCGATATAATGGAAAGCTTCAAT 1622
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1776 GCATCTGCATACCGAACCAAATTCGAAGCAACTCTACCTGATATAATGGAAAGCTTCAAT 1835
Query 1623 GATCTGTATCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAGAACGGGTTCTC 1682
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1836 GATCTGTACCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAGAACGGGTTCTC 1895
Query 1683 AAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGACGCATACATATATGGACTA 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 AAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGACGCATACATATATGGACTA 1955
Query 1743 CGATCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTCATTTCATTCTATCTGCGGT 1802
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 CGTTCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTCATTTCATTCTATCTGCGGT 2015
Query 1803 GATGCACCTGAAATAGAGAACAAAAGTTACGCTGACAATATGAGTGATATTGGGAAGATC 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2016 GATGCACCTGAAATAGAGAACAAAAGTTACGCTGACAATATGAGTGATATTGGAAAGATA 2075
Query 1863 AATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCAAGGCAAGAGCTGATGAATTTA 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 AATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCAAGGCAAGAGCTGATGAATTTA 2135
Query 1923 CCAATTGCTGAGCTTGAGAGGCGTTGCCGGCACAACGGACTGTCTCTTGTAGGAGGTAGA 1982
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2136 CCAATTGCTGAGCTTGAGAGGCGTTGTCGGCACAACGGACTGTCTCTTGTAGGAGGTAGA 2195
Query 1983 GTAATGATGGTTGCCCGGCTACTAAGCCTTGAAGACACAGAGAAACAACGTGGCTATGAA 2042
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2196 GTAATGATGGTTACCCGGCTACTAAGCCTTGAAGACACAGAGAAACAACGCGGCTATGAA 2255
Query 2043 TCAGTGGATGAAATTTCAAAGCATCCGCAAAACCATTCAACTTGGGAAGAAGTTAAGAGT 2102
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 GCAGTGGATGAAATTCCAAAGCATCCGCAAAACCATTCAACTTGGGAAGAAGTTAAGAGT 2315
Query 2103 GAGCGGGAGCATATCAAGAACAGCTACGCAGAGGTTGAAATGAAAGAGCCTATTAATCTG 2162
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 2316 GAGCGGGAGCATATCAAGAACAGCTACGCAGAGGTTGAAATGAAAGAGCCTGTGAATCTA 2375
Query 2163 GCCACGACAATACCAATCCCACAGCCTGAGCTGAAAGCCTTTGTGGCAAAAGAGAAGAAT 2222
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2376 CCCACGACAATACCAATCCCACAGCCTGAGCTGAAAGCCTTTGTGGGAAAAGAGAAGAAT 2435
Query 2223 GACCTCATATTGCCAGCTTCAAAATGGGCGAGAGACGATGACGAAGCTGATGATGAGCAA 2282
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2436 GAACTCATATTGCCAGCTTCAAAATGGGCGAGAGACGATGATGAAGCTGATGATGAACAA 2495
Query 2283 AAGAGGAGCTCCTCTTCAGGAAGTGACAATACTGGTGGGATAACTTTCAAGGCCGATGAC 2342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2496 AAGAGGAGCTCCTCTTCAGGAAGTGACAATACTGGTGGGATAACTTTCAAGGCCGATGGC 2555
Query 2343 GAGGATCTCAAGGGAAATGATTGTGTCCGTGCCCAACCTGACAATGGAATGGACGAGGAA 2402
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2556 GAGGATCTCAAGGGAAATGATTGTGTCCGTGCCCAACCTGACAACGGAATGGACGAGGAA 2615
Query 2403 CAAAGACAAAAGCGTAGACGCATAGAAGTTGCTTTGATAGAGTATCGTGAAACTCTTGAG 2462
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2616 CAAAGACAAAAGCGGAGACGCATAGAAGTTGCTTTGATAGAGTATCGTGAAACTCTTGAG 2675
Query 2463 GAACAGGGGATGAAAAACTCCGAGGAGATAGAGAGAAAAGTAGAAATCAACAGAAAGAGG 2522
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 2676 GAACAGGGGATGAAAAACCCCGAAGAGATAGAGAGAAAAGTAGAAATAAACAGAAAGAGG 2735
Query 2523 CTTGAAGTTGATTATGGCTTATCCAA-ACCTAACGAGGGCAACAGAAATCAGAAATCAAT 2581
|||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2736 CTTGAAGTCGATTATGGCTTATC-AGGACCTAACGAGGGCAACAGAAATCAGAAATCAAT 2794
Query 2582 CATAGAGCTGAAGGATAAGCGTGAAGATTCGCAAGAATCTTCTAAAAAGCGGCACCGTGG 2641
||||||| |||||| |||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 2795 AATAGAGCGGAAGGAGAAGCGTGAAGATTCACAAGAGTCCTCTAAAAAGCGGCACCGTGG 2854
Query 2642 GGAAAACCAGAGCCAAAGTCCGCCACGGAAATCATCAACcagggagagggaaagagatca 2701
||||||| ||||||||||||||||||||||||||||||| |||||||| | || |||
Sbjct 2855 GGAAAACAAGAGCCAAAGTCCGCCACGGAAATCATCAACGAGGGAGAG--A--GA--TCA 2908
Query 2702 tgacttggagagagacagggacagagagagacacagagacagagaTAGGCAACATGATTT 2761
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2909 TGACTTGGGGAGAGACAGGGATAGAGAGAGACACAGAGACAGAGATAGGCAACATGATTT 2968
Query 2762 GAACAGGGATCGAGACCGACGTGAAAAGAGTTCAAGCCACGATCGAGATGATCATGATAG 2821
||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 2969 GAACAGGGATCGAGATCGACGTGAAAAGAGTTCAAGCCACGATCGAGACGATAATGATAG 3028
Query 2822 AAGCAAAGAGAGAGACAGGGATTGGCGCAGACGAGGCACGAGATGATGATGATG-TTAT 2879
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 3029 AAGCAAAGAGAGAGACAGGGATTGGCGCAGACGAGGCACGAGATGATAATGATGATTAT 3087
> AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412654-3418382 REVERSE LENGTH=3088
Length=3088
Score = 2449 bits (1326), Expect = 0.0
Identities = 2413/2921 (83%), Gaps = 141/2921 (5%)
Strand=Plus/Plus
Query 21 ATGAGTTCATTCTCGATCACTC-gaaagaaaacgccattccagaaacacagagaagaaga 79
|||||||| ||||||||||| | | |||||||| || |||||||||||||||||||||||
Sbjct 11 ATGAGTTCTTTCTCGATCACCCTGGAAGAAAACACCGTTCCAGAAACACAGAGAAGAAGA 70
Query 80 agaagctc-ggaagaagaaagCGGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGG 138
|||||| | |||||||| ||||||||||||||| |||||| |||||||||| | |||||
Sbjct 71 AGAAGC-CAAGAAGAAGAGAGCGGAGGATGAAACAGCTCGTCTGTATCAAGAGTCCGTGG 129
Query 139 AATCGTTTCAAGGAGATAATGCAACTA-CTAAGACTTTTGTTCGAGGTGGGACGATAAAT 197
||||||||||||| |||||||| | | |||||||||||||| ||||| ||| || |||
Sbjct 130 AATCGTTTCAAGGGGATAATGCTGC-AGCTAAGACTTTTGTTAGAGGT--GACAATCAAT 186
Query 198 -CC--TGGTGACAAGCCT-AAGGTTGATTCTGAAGGTGAAAAGTCCGA-AGATGGGGGTT 252
|| || | | ||| || ||| ||||||| |||||||||||||| | |||||||| ||
Sbjct 187 CCCAATGATAATAAG-CTCAAGCCTGATTCTCAAGGTGAAAAGTCC-AGAGATGGGGATT 244
Query 253 CGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCT-CTTTCCTTCCACCACCACTGGCATCT 311
| |||||||||||||||||||||||||||||| |||| || || |||||| ||||||||
Sbjct 245 CCATTTCAAAGAAGGGGAGTAGGTATGTTCCCTCCTTT-CTCCCCCCACCATTGGCATCT 303
Query 312 aagggtaaagaaccggagaagaagagggaggaggagaggcctagggaga-gagaaaaggg 370
|||||||||| ||| ||||| |||||||| || ||||| | | ||||| | ||||||||
Sbjct 304 AAGGGTAAAGGACCAGAGAATAAGAGGGATGAAGAGAGATCAAAGGAGATG-GAAAAGGG 362
Query 371 aaagaCTCGAAATATAGATCATTTCATGGAGGAGTTGAAACGTGAACAAGAAATGAGAGA 430
|||||||||||| ||||||||||| |||||||| | || |||||||||||||| |||||
Sbjct 363 AAAGACTCGAAACATAGATCATTTTGTGGAGGAGCTCAAGCGTGAACAAGAAATAAGAGA 422
Query 431 GAGACGAAACCAGGAT--CGTG-A---CCGT---C---AGGGTGATAACTCGCCATCTAG 478
|| |||||||||||| || | | |||| | | |||||||| || |||||||
Sbjct 423 AAGGCGAAACCAGGATCGCGAGAATTCCCGTGACCATAATAGTGATAACACGTCATCTAG 482
Query 479 CCGCTTTGATGAGCTACCTGATGATTTTGATCCCAGTGGAAGGCCAGGATCGTTTGACGA 538
|||||||||||||||||||||| |||||||||||||||||||| ||| || || |||||
Sbjct 483 CCGCTTTGATGAGCTACCTGATTATTTTGATCCCAGTGGAAGGTTAGGGTCATTGGACGA 542
Query 539 TGGTGACCCACAAACTACAAATCTATATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAA 598
|||||||||||||||||||||||||||||||| |||||| || | ||||||||||| ||
Sbjct 543 TGGTGACCCACAAACTACAAATCTATATGTTGTGAATCTTTCATCTAAGGTTGATGAAAA 602
Query 599 TTTCCTTCTGCGCACTTTCGGAAGATTTGGACCCATAGCTAGTGTCAAGATTATGTGGCC 658
||| |||||||| ||||| ||||||||||| || ||||||||||| || |||||||||||
Sbjct 603 TTTTCTTCTGCGGACTTTTGGAAGATTTGGGCCAATAGCTAGTGTTAAAATTATGTGGCC 662
Query 659 AAGAACAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAG 718
||||||||| |||||||| |||||| |||| | |||||||||||| | |||||||||||
Sbjct 663 AAGAACAGAGGAGGAGAAAAGGCGAGAAAGGCATTGTGGCTTTGTTGCTTTCATGAATAG 722
Query 719 GGCTGATGGACAAGCTGCAAAAGATGAAA-TGCAAGGGATCATTGTGTATGAGTATGAAC 777
|| || ||| ||||||||||||| |||| |||||||||||||||||||||||||||| |
Sbjct 723 AGCCGACGGAGAAGCTGCAAAAGA-GAAAATGCAAGGGATCATTGTGTATGAGTATGAGC 781
Query 778 TGAAAATTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCTCCAC 837
||||||||||||||||||||| ||||| ||| || ||||||||| |||| ||||| || |
Sbjct 782 TGAAAATTGGATGGGGTAAAGTAGTTTTTCTGCCATCACAAGCACTACCAGCTCCACCTC 841
Query 838 CTGGACATATGGCTATTCGGAGTAAAGAGGGCTGCAACTTGGTTTTTTCTGGT-CAAACG 896
|||| |||||||| || |||||||| ||||||||||| || ||||||||| | || ||
Sbjct 842 CTGGGCATATGGCAATCCGGAGTAAGGAGGGCTGCAATTTAATTTTTTCTGTTACAT-CG 900
Query 897 GGTCCACCAATTATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAAC 956
||||||||||| | | ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 901 GGTCCACCAATGA-A--TTCCGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCAAAT 957
Query 957 GTTCCGGATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATG-TGATTGATAC 1015
|||||||||||||||||| || | ||||||||||||||||||| ||| | | || |||||
Sbjct 958 GTTCCGGATATCACTGTTATTTCTCCTGAGGACGAGCACCTCAAACA-GATTATAGATAC 1016
Query 1016 ATTGGCTCTCTA-TGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGG 1074
| |||| || || ||| ||||| |||| ||| ||||||||||||||||| ||||||||||
Sbjct 1017 AATGGCCCT-TAATGTACTGGACGGTGGATGCGCTTTTGAACAAGCTATTATGGAGAGGG 1075
Query 1075 GCCGTGGGAATCCACTGTTTAAGTTTTTGTTCGAGCTTGGCTCAAAGGAGCATACTTACT 1134
| ||||| |||||||| ||||| || ||||| ||||| ||||| ||||||||||| ||||
Sbjct 1076 GGCGTGGTAATCCACTTTTTAACTTCTTGTTTGAGCTGGGCTCGAAGGAGCATACCTACT 1135
Query 1135 ACGTCTGGAGACTCTATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGGACAGAGC 1194
| |||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 1136 ATGTCTGGAGGCTCTATTCCTTTGCTCAGGGTGATACCCTTCAAAGGTGGAGAACAGAGC 1195
Query 1195 CGTATATCATGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGA 1254
|||||||||||||| |||| |||||||||||||| |||||||| ||||||| ||||||||
Sbjct 1196 CGTATATCATGATAGCTGGAAGTGGAAGATGGATTCCGCCACCGCTGCCTGCAACTAGGA 1255
Query 1255 -CCCAGGAGCACGAAAAAGAGTCT-GCCAG-CACATATGCAGC-GGGAAGAACCAGGCGT 1310
||||| |||| | |||||||||| | || |||||| ||||| ||||| || |||| |
Sbjct 1256 GCCCAG-AGCATGGAAAAGAGTCTAG--AGGCACATACGCAGCAGGGAA-AAGCAGGTGC 1311
Query 1311 GCGGAAGTTGAG-AGGACTCTGACCGAC-CCTCAGAGGGATGAGTACGAGGACATGTTGC 1368
|||||| |||| | ||||| ||||| || || |||||||| | |||||||||||||
Sbjct 1312 ACGGAAGCTGAGCAA-ACTCTAACCGATTCC-CAAAGGGATGAATTTGAGGACATGTTGC 1369
Query 1369 GTGCTCTTACTTTAGAAAGGAGTCAGATAAAAGAAGCTATGGG-TTTCGCTTTAGATAAT 1427
| ||||| ||||||||||||||||| || | |||||||||||| ||| ||||| |||||
Sbjct 1370 GCGCTCTAACTTTAGAAAGGAGTCAAATCAGAGAAGCTATGGGGTTT-GCTTTGGATAAC 1428
Query 1428 GCAGATGCAGCTGGAGAGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACA 1487
||||| |||||||| ||||||||||||||| |||| ||||| |||| || |||||||||
Sbjct 1429 GCAGAGGCAGCTGGTGAGGTTGTTGAAGTTCTGACTGAGTCGTTGACCCTGAAAGAGACA 1488
Query 1488 TCAATTCCAACCAAAGTTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGT 1547
|||||||| || |||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 1489 TCAATTCCCACTAAAGTTGCAAGACTCATGCTTGTGTCTGACATTATTCATAATAGCAGC 1548
Query 1548 GC-CAGTGTTAAAAATGCATCTGCATACCGAACCAAATTCGAAGCAAC-TCTACCCGATA 1605
|| | | ||||||||||| ||||||||||| || |||||||||||||| | |||| ||||
Sbjct 1549 GCTCGG-GTTAAAAATGCCTCTGCATACCGGACAAAATTCGAAGCAACAT-TACCTGATA 1606
Query 1606 TAATGGAAAGCTTCAATGATCTGTATCGA-AGCATA-ACTGGAAGAATTACTGCTGAGGC 1663
|||||||||||||||| ||||| || | | ||| || | |||||| ||||| || |||||
Sbjct 1607 TAATGGAAAGCTTCAACGATCTATACC-ACAGCGTACA-TGGAAGGATTACCGCGGAGGC 1664
Query 1664 TCTAAAAGAACGGGTTCTCAAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGA 1723
||| | |||||| || || ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1665 TCTTAGAGAACGAGTACTAAAAGTACTGCAGGTATGGGCAGACTGGTTTCTCTTCTCAGA 1724
Query 1724 CGCATACATATATGGACTACGATCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTC 1783
||||| ||| |||| ||||| ||||||||||||| ||| || || ||||||||||||
Sbjct 1725 TGCATATATAAATGGGCTACGGGCCACATTTCTCCGGTCAAGAAACTTTGGTGTTACCTC 1784
Query 1784 ATTTCATTCTATCTGCGGTGATGCACCTGAAATAGAGAACAAAAGT-TACGCT-GACAAT 1841
|||||||||||||| |||||||| ||||| |||||||| ||| || | | | | ||||
Sbjct 1785 GTTTCATTCTATCTGTGGTGATGCGCCTGATATAGAGAAGAAAGGTCT--GATAGGCAAT 1842
Query 1842 ATGAGTGATATTGGGAAGATCAATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCA 1901
|||| ||| || |||||||||| ||| |||||||||||||| || |||||||||||
Sbjct 1843 ATGAACGATGCTGATAAGATCAATCAAGACGCTGCACTGGCAATGGGTGAAGGAGCTGCA 1902
Query 1902 AGGCAAGAGCTGATGAATTTACCAATTGCTGAGCTTGAGAGGCGTTGCCGGCACAACGGA 1961
||||||||||| |||||| ||||||| | |||||||| ||||| ||| | ||||||||
Sbjct 1903 AGGCAAGAGCTAATGAATCGACCAATTTCAGAGCTTGAAAGGCGCTGCAGACACAACGGT 1962
Query 1962 CTGTCTCTTGTAGGAGGTAGAGTA-ATGATGGTTGCCCGGCTACTAAGCCTTGAA-GACA 2019
|| || ||| |||| ||||||| | ||||||||||| ||||| || | || ||| ||
Sbjct 1963 CTATCACTTTTAGGGGGTAGAG-AGATGATGGTTGCTCGGCTGGTATGTCT-GAAAGATG 2020
Query 2020 CAGAGAAACAACGTGGCTATGAA-TCAGTGGATGAAATTTCAAAGCATCCG-CAAA-ACC 2076
||||||||||||||||||||||| | ||| ||||||| | ||||| ||| | || ||
Sbjct 2021 CAGAGAAACAACGTGGCTATGAAGT-AGTAGATGAAAATGCAAAGTATC-GACAGGGAC- 2077
Query 2077 ATTCAACTTGGGAAGAAGTTAAGAGTGAGCGGGAGCATATCAAGAAC-AGCTACGC-AGA 2134
|||||||||||||||||||||| | ||||| ||| || || ||| ||||| | | |
Sbjct 2078 ATTCAACTTGGGAAGAAGTTAACATTGAGCCTAAGCGGATGAA-AACCAGCTATGATAAA 2136
Query 2135 GGTTGAAA-TGAAAGAGCCTATTAATCTGGCCACGACAATACCAATCCCACAGCCTGAGC 2193
| | |||| |||| |||||| | |||||||| |||||||||||||||||||||| ||||
Sbjct 2137 G-TGGAAACTGAA-GAGCCTGTGGATCTGGCCTCGACAATACCAATCCCACAGCCGGAGC 2194
Query 2194 TGAAAGCCTTTGTGGCAA-AAG-AGAAGAAT-GACCTCATAT-TGCCAGCTTCAAAATGG 2249
| ||||||||||| || ||| |||| ||| |||||||| | | ||| |||| | ||||
Sbjct 2195 TAAAAGCCTTTGTA--AAGAAGGAGAA-AATTGACCTCAT-TCTACCAACTTCCAGATGG 2250
Query 2250 GCGAGAGACGATGACGAAGCTGATGATGAGCAAAAGAGGAGCTCCTCTTCAGGAAGTGAC 2309
|||||||| ||||| ||| |||||||||| ||||| | ||||| ||| || || || |||
Sbjct 2251 GCGAGAGAAGATGATGAAACTGATGATGAACAAAAAAAGAGCTACTCCTCTGGTAGCGAC 2310
Query 2310 AATACTGGTGGGATAACTTTCAAGGCCGATGACGAGGATCTCAAGGGAAATG-ATTGTGT 2368
||| ||||||| |||||||||||| ||||||| ||||||||||| | || | ||||
Sbjct 2311 AATGCTGGTGGAATAACTTTCAAGACCGATGAAGAGGATCTCAAAGCTGATCCAA-GTGT 2369
Query 2369 CCGTGCCCAACCTGACAATGGAATGGACGAGGAACAAAGACAAAAGCGTAGACGCATAGA 2428
|||| ||| ||||| |||| ||| |||| ||| ||||||||||||| ||||| ||||||
Sbjct 2370 TCGTGTCCAGCCTGAAAATGAAATCGACGTGGAGCAAAGACAAAAGCTTAGACACATAGA 2429
Query 2429 -AGTTGCTTTGATAGAGTATCGTGAAACTCTTGAGGAACAGGGGATGAAAAACTCCGAGG 2487
| ||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||||
Sbjct 2430 GA-TTGCTTTGATAGAGTATCGAGAATCTCTTGAGGAACAAGGGATGAAAAACTCTGAGG 2488
Query 2488 AGATAGAGAGAAAAGTAGAAATCAACAGAAAGAGGCTTGAAGTTGATTATGGCTTATCC- 2546
||||||| |||||||| | ||| || ||||||||||||||| |||| ||||||||
Sbjct 2489 AGATAGAAAGAAAAGTTGCTATCCACCGAAAGAGGCTTGAAGCTGAT---GGCTTATCAG 2545
Query 2547 -AAACCTAACGAGGGCAACAGAAATCAGAAATCAATCATAGAGCTGAAGGATAAGCGTGA 2605
||| | | ||| | | | | || | || | | | || | | | ||||||
Sbjct 2546 GAAATC-A--GAGAGTATT-GCC--C-GAGA--AA--A--G-G--GA-G-A-A-GCGTGA 2585
Query 2606 AGATTCGCA-AGAATCTTCTAAAAAGCGGCACCGTGGGGAAAACCAGA---G---CCAAA 2658
|||||| | ||| || |||| |||| | |||| | || | ||||| | ||| |
Sbjct 2586 AGATTCT-AGAGATTCATCTAGAAAGAGAAACCGAAGTGAGAGCCAGAATCGAAGCCAGA 2644
Query 2659 GTCCGCCACGGAAATCATCAACcagggagagggaaagagatcatgacttggagagagaca 2718
|||| |||| |||||||| |||||| || |||| ||||||||||||||||| | |||||
Sbjct 2645 GTCCACCACAGAAATCATTAACCAGAGAAAGGGTGAGAGATCATGACTTGGACAAAGACA 2704
Query 2719 gggacagagagagacacagagacagag-aTAGGCAACATGATTTGAACAGGGATCGAGAC 2777
| ||| ||||| || |||| || | | | |||||||||||| ||| ||| ||| |
Sbjct 2705 G--ACACAGAGA--CA--GAGATAG-GCA-A--CAACATGATTTGGACAAGGACCGAAAA 2754
Query 2778 CGACGTGAAAAGAGTTCAAGCCACGATCGAGATGATCATGATAGAAGCAAAGAGAGAGAC 2837
||| | | |||||| ||||| | ||| |||| |||||||||||||||| |||| ||||
Sbjct 2755 CGAAGAGCAAAGAGCTCAAGTCGCGAGAGAGACGATCATGATAGAAGCAGAGAGCGAGAT 2814
Query 2838 AGGGATTGGCGCAGACGAGGCACGAGATGATGATGAT-GTT 2877
|| ||||||||||||||||||| ||||||| |||||| |||
Sbjct 2815 AGAGATTGGCGCAGACGAGGCATGAGATGA-GATGATTGTT 2854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143477456980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5