BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942065
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25100.2 | Symbols: | Endomembrane protein 70 protein famil... 3199 0.0
AT5G10840.1 | Symbols: | Endomembrane protein 70 protein famil... 2211 0.0
AT1G55130.1 | Symbols: TMN6, AtTMN6 | Endomembrane protein 70 p... 699 0.0
> AT5G25100.2 | Symbols: | Endomembrane protein 70 protein family
| chr5:8648006-8651176 REVERSE LENGTH=2485
Length=2485
Score = 3199 bits (1732), Expect = 0.0
Identities = 1911/1995 (96%), Gaps = 21/1995 (1%)
Strand=Plus/Plus
Query 1 TCTGTGGAACCGCCATAGCTATGGAGTTTTATAGAAGTTCTAGAAGATTACAAATTCTCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 142 TCTGTGGAACCGCCATAGCTATGGAGTTTTATAGAAGTTCTAGAAGATTACAAATTCTTG 201
Query 61 GATCTGTGATTCTTCTTCTCTTTATCCATGGCGCTTACTCTTTTTACCTTCCTGGTGTTG 120
|||||||||||||||| |||| ||| |||| |||| ||||||||||||||||||||||||
Sbjct 202 GATCTGTGATTCTTCTGCTCTCTATTCATGTCGCTCACTCTTTTTACCTTCCTGGTGTTG 261
Query 121 CTCCTCAGGATTTC------G-----A--A---AAG-----GGAGATGAATTGAAAGTGA 159
|||||||||||||| | | | ||| |||||||||||||||||||
Sbjct 262 CTCCTCAGGATTTCGAAAAGGATTCAATTAGCGAAGCAATCGGAGATGAATTGAAAGTGA 321
Query 160 AAGTAAACAAGTTGACATCTATTAAGACTCAGCTTCCGTATTCGTATTACTCTCTTCCTT 219
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 322 AAGTAAACAAGTTGACATCTATAAAGACTCAGCTTCCATATTCGTATTACTCTCTTCCTT 381
Query 220 TTTGCCGTCCTAAGAAGATTGTCGACAGTACTGAGAATCTTGGTGAAGTGCTTCGCGGTG 279
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 382 TTTGTCGTCCTAAGAAGATTGTGGACAGTACTGAGAATCTTGGTGAAGTTCTTCGTGGTG 441
Query 280 ACCGAATCGAAAATGCTCCTTATTCGTTTAAAATGCGTGAGGCACAAATGTGCAATATTC 339
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 442 ACCGAATCGAAAATGCTCCTTATTCGTTTAAAATGCGTGAGGCGCAAATGTGTAATGTTC 501
Query 340 TCGGCCGTGTTACGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATG 399
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TCGGTCGTGTTATGCTTGATGCAAAGTCTGCCAAAGCGTTTAAAGAGAAGATTGATGATG 561
Query 400 AGTACCGGGTTAACATGATCCTTGATAATCTTCCTCTAGTGGTTCCAATCGAAAGAATTG 459
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 562 AGTATCGAGTTAACATGATCCTTGATAATCTTCCTCTAGTGGTTCCGATCGAAAGAATTG 621
Query 460 ATCCGGGTCAGGGTTCTCCTTCTGTTGTGTATCAGCTAGGCTATCATGTTGGTCTTAAAG 519
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 622 ATCCGGGTCAGGGTTCTCCTTCTGTTGTGTATCAGCTAGGATATCATGTTGGTCTTAAAG 681
Query 520 GCCAGTATGAAGGGAGCAAAGAGCAAAAGTACTTTATGCACAATCACTTGGCATTTACTG 579
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 682 GCCAGTATGAAGGGAGCAAAGAGCAAAAGTATTTTATGCACAATCACTTGGCATTCACTG 741
Query 580 TCCGGTATCACAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTTAAAC 639
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 742 TCCGGTATCATAGAGATATGCAAACCGATGCTGCAAGGATTGTGGGATTTGAGGTCAAAC 801
Query 640 CATACAGTGTTAAGCATGAATACGAGGGACCATGGAGTGAGAAGACCCGTTTGACTACCT 699
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 802 CATACAGTGTCAAGCATGAATACGAGGGACAATGGAGTGAGAAGACCCGTTTGACTACCT 861
Query 700 GTGATCCCCACACAAAGCGCCTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAAAATA 759
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GTGATCCCCACACTAAGCGACTGGTTGTTAGCTCAGCTACCCCTCAAGAAGTCGAAAATA 921
Query 760 AGAAGGAAATTATCTTCACATATGATGTTGACTTTCAGGAAAGTGAAGTGAAGTGGGCGT 819
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AGAAAGAAATTATCTTCACATATGATGTTGACTTTCAGGAAAGTGAAGTGAAGTGGGCGT 981
Query 820 CTAGATGGGATGCTTATCTTCTGATGAGCGACAATCAAATTCACTGGTTCTCTATCGTCA 879
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 982 CTAGATGGGATGCTTATCTTTTGATGAGCGACAATCAAATTCACTGGTTTTCTATTGTCA 1041
Query 880 ACTCTCTGATGATCGTCCTCTTCCTTTCTGGTATGGTAGCGATGATTATGCTAAGGACCC 939
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1042 ACTCTCTTATGATCGTCCTCTTCCTCTCTGGTATGGTAGCGATGATTATGCTAAGGACCC 1101
Query 940 TTTACCGTGACATTTCACGGTACAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAGA 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TTTACCGTGACATTTCACGGTACAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAGA 1161
Query 1000 CTGGGTGGAAACTCGTCCATGGCGATGTTTTCAGGCCTCCAACCAATTCAGATCTTCTCT 1059
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1162 CTGGGTGGAAACTCGTCCATGGTGATGTTTTCAGGCCTCCAGCCAATTCAGATCTTCTCT 1221
Query 1060 GCGTCTATGTTGGCACAGGTGTCCAGTGTTTAGGCATGGTACTTGTCACTATGATCTTCG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GCGTCTATGTTGGCACAGGTGTCCAGTGTTTAGGCATGGTACTTGTCACTATGATCTTCG 1281
Query 1120 CCATGCTCGGATTTCTATCACCTTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCTTC 1179
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1282 CCATGCTCGGATTTTTATCACCTTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCTCC 1341
Query 1180 TCTGGGTCTTCATGGGCCTCTTTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTTCA 1239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 TCTGGGTCTTCATGGGACTCTTTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTTCA 1401
Query 1240 AAGGAACAGAATGGAAGAGAATTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGTCT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 AAGGAACAGAATGGAAGAGAATTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGTCT 1461
Query 1300 CAGCTATCTTCTTTGTCCTAAACGCACTCATCTGGGGACAAAAATCATCTGGAGCTGTTC 1359
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1462 CAGCCATCTTCTTTGTCCTAAACGCTCTCATCTGGGGACAAAAATCATCCGGAGCTGTTC 1521
Query 1360 CCTTTGGAACAATGTTTGCTCTGATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 CCTTTGGAACAATGTTTGCTCTGATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCT 1581
Query 1420 TTGTTGGCGCGTACCTCGGATTCAAGAAGCCACCACTTGATGATCCCGTGAAAACCAACA 1479
|||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 1582 TTGTCGGCGCTTACCTCGGATTCAAGAAGCCACCGCTCGATGACCCCGTGAAAACCAACA 1641
Query 1480 AAATCCCACGTCAAATCCCAGAGCAAGCTTGGTACATGAACCCAGTTTTCTCAATCCTCA 1539
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1642 AAATCCCACGTCAAATCCCGGAGCAAGCTTGGTACATGAACCCAATTTTCTCAATCCTCA 1701
Query 1540 TTGGAGGAATCTTACCATTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCCA 1599
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1702 TTGGAGGAATCTTACCGTTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCA 1761
Query 1600 TCTGGCTTAACCAGTTCTACTACATCTTCGGATTCCTCTTCCTCGTCTTTGTGATCCTTA 1659
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1762 TCTGGCTCAACCAGTTCTACTACATCTTCGGTTTCCTCTTCCTCGTCTTTGTGATCCTTA 1821
Query 1660 TGGTCACATGCGCTGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACT 1719
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 TGGTCACCTGCGCCGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACT 1881
Query 1720 ATCTCTGGTGGTGGAGGTCTTACCTCACCTCAGGTTCTTCTGCGGTCTATCTCTTCCTCT 1779
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1882 ATCTCTGGTGGTGGAGGTCTTACCTCACCTCAGGCTCTTCTGCGGTCTATCTCTTCCTCT 1941
Query 1780 ACGCAGCCTTCTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCGGCCATGCTCT 1839
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1942 ACGCAGCCTTCTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCAGCTATGCTCT 2001
Query 1840 ACTTCGGATACATGCTTATCGCCTCTTACGCGTTTTTTGTGCTGACCGGAACAATCGGGT 1899
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2002 ACTTTGGATACATGCTCATCGCCTCTTACGCGTTTTTCGTGCTGACCGGAACAATCGGGT 2061
Query 1900 TCTACGCTTGTCTCTGGTTCACAAGGCTCATCTATTCCTCGGTAAAGATCGATTGATTCA 1959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2062 TCTACGCTTGTCTCTGGTTCACAAGACTCATCTATTCCTCGGTAAAGATCGATTGATTCA 2121
Query 1960 GAAAAACATTCAAGA 1974
|||||||||||||||
Sbjct 2122 GAAAAACATTCAAGA 2136
> AT5G10840.1 | Symbols: | Endomembrane protein 70 protein family
| chr5:3424688-3427878 REVERSE LENGTH=2250
Length=2250
Score = 2211 bits (1197), Expect = 0.0
Identities = 1670/1899 (88%), Gaps = 30/1899 (2%)
Strand=Plus/Plus
Query 67 TGATTCTTCTTCTCTTTATCCATGGCGCTTACTCTTTTTACCTTCCTGGTGTTGCTCCTC 126
||||| |||| ||||| |||||||| ||| |||| || || || || |||||||||||||
Sbjct 146 TGATTTTTCTGCTCTTCATCCATGGAGCTCACTCATTCTATCTCCCAGGTGTTGCTCCTC 205
Query 127 AGGATTTCGAAAAGGGAGATGAATTGAAAGTGAAAGTAAACAAGTTGACATCTATTAAGA 186
|||||||||| ||||| ||||| |||| |||||||| || || || || || || ||||
Sbjct 206 AGGATTTCGAGAAGGGTGATGAGCTGAAGGTGAAAGTGAATAAATTAACTTCCATAAAGA 265
Query 187 CTCAGCTTCCGTATTCGTATTACTCTCTTCCTTTTTGCCGTCCTAAG-AAGATTGTCGAC 245
|||||||||| || ||||||||||| ||||||||||| || ||| || |||||||| |||
Sbjct 266 CTCAGCTTCCATACTCGTATTACTCCCTTCCTTTTTGTCGCCCT-AGCAAGATTGTGGAC 324
Query 246 AGTACTGAGAATCTTGGTGAAGTGCTTCGCGGTGACCGAATCGAAAATGCTCCTTATTCG 305
||||||||||||||||| ||||||||||| |||||||| || || ||||| || || |||
Sbjct 325 AGTACTGAGAATCTTGGAGAAGTGCTTCGGGGTGACCGGATTGAGAATGCCCCATACTCG 384
Query 306 TTTAAAATGCGTGAGGCACAAATGTGCAATATTCTCGGCCGTGTTACGCTTGATGCAAAG 365
||||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||
Sbjct 385 TTTAAAATGCGGGAGGCACAAATGTGCAATATTCTCGGCCGGGTCACTCTTGATGCCAAG 444
Query 366 TCTGCCAAAGCGTTTAAAGAGAAGATTGATGATGAGTACCGGGTTAACATGATCCTTGAT 425
| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||
Sbjct 445 ACAGCTAAAGCGTTTAAAGAAAAGATCGATGATGAGTACCGGGTCAACATGATCCTCGAC 504
Query 426 AATCTTCCTCTAGTGGTTCCAATCGAAAGAATTGATCCGGGTCAGGGTTCTCCTTCTGTT 485
|| |||||||| || |||||||| ||||| | | | | | ||||||||||| ||||||
Sbjct 505 AACCTTCCTCTGGTTGTTCCAATTGAAAG-A--G-T-C-GACCAGGGTTCTCCCTCTGTT 558
Query 486 GTGTATCAGCTAGGCTATCATGTTGGTCTTAAAGGCCAGTATGAAGGGAGCAAAGAGCAA 545
|| |||||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 559 GTTTATCAGCTTGGTTATCATGTTGGTCTTAAAGGCCAGTACGAGGGGAGCAAAGAGCAG 618
Query 546 AAGTACTTTATGCACAATCACTTGGCATTTACTGTCCGGTATCACAGAGATATGCAAACC 605
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 619 AAGTTCTTTATGCACAATCACTTGGCATTTACAGTCCGCTATCACAGAGATATCCAAACT 678
Query 606 GATGCTGCAAGGATTGTGGGATTTGAGGTTAAACCATACAGTGTTAAGCATGAATACGAG 665
||||||||||| || |||||||||||||||||||| |||||||| |||||||| || |||
Sbjct 679 GATGCTGCAAGAATCGTGGGATTTGAGGTTAAACCTTACAGTGTGAAGCATGAGTATGAG 738
Query 666 GGACCA-TGGAGTGAGAAGACCCGTTTGACTACCTGTGATCCCCACAC-AAAGCGCCTGG 723
||| | |||||||||||||||||| |||| || |||||||| ||||| ||| |||||||
Sbjct 739 GGA-GAGTGGAGTGAGAAGACCCGTCTGACGACTTGTGATCCTCACACGAAA-CGCCTGG 796
Query 724 TTGTTAGCTCAGCTACCCCTCAAGAAGTCGAA-AATAAGAAGGAAATTATCTTCACATAT 782
| |||||||| ||||||||||||||||| ||| || |||||||| |||||||||||||||
Sbjct 797 TCGTTAGCTCGGCTACCCCTCAAGAAGTTGAACAA-AAGAAGGAGATTATCTTCACATAT 855
Query 783 GATGTTGACTTT-CAGGAAAGTGAAGTGAAGTGGGCGTCTAGATGGGATGCTTATCTTCT 841
|| || || ||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 856 GACGTCGA-TTTCCAGGAAAGTGAAGTGAAGTGGGCATCTAGATGGGATACTTATCTTCT 914
Query 842 GATGAGCGACAATCAAATTCACTGGTTCTCTATCGTCAACTCTCTGATGATCGTCCTCTT 901
|||||| || || ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 915 GATGAGTGATAACCAAATCCACTGGTTCTCTATCGTCAATTCTCTGATGATCGTCCTATT 974
Query 902 CCTTTCTGGTATGGTAGCGATGATTATGCTAAGGACCCTTTACCGTGACATTTCACGGTA 961
||| ||||||||||| || ||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 975 CCTATCTGGTATGGTGGCAATGATAATGCTGAGGACCCTTTACCGTGACATTTCACGATA 1034
Query 962 CAACGAGCTTGAGACTCAAGAGGAAGCTCAAGAAGAGACTGGGTGGAAACTCGTCCATGG 1021
||||||||| ||||||||||| ||||||||||||||||| || ||||| || ||||||||
Sbjct 1035 CAACGAGCTCGAGACTCAAGAAGAAGCTCAAGAAGAGACAGGATGGAAGCTTGTCCATGG 1094
Query 1022 CGATGTTTTCAGGCCTCCAACCAATTCAGATCTTCTCTGCGTCTATGTTGGCACAGGTGT 1081
||||||||||| | ||| |||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 1095 TGATGTTTTCAGACTTCCTACCAATTCTGATCTGCTCTGCGTCTATGTTGGAACAGGGGT 1154
Query 1082 CCAGTGTTTAGGCATGGTACTTGTCACTATGATCTTCGCCATGCTCGGATTTCTATCACC 1141
||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| || ||
Sbjct 1155 CCAGTGTCTAGGCATGGTATTTGTCACAATGATCTTCGCCATGCTCGGATTTCTCTCCCC 1214
Query 1142 TTCCAACCGTGGAGGTCTTATGACAGCCATGCTCCTT-CTCTGGGTCTTCATGGGCCTCT 1200
|||||| || || ||||| ||||| || ||||| ||| ||||||||||||||||| ||||
Sbjct 1215 TTCCAATCGGGGTGGTCTGATGACTGCAATGCT-CTTGCTCTGGGTCTTCATGGGACTCT 1273
Query 1201 TTGCCGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAACAGAATGGAAGAGAA 1260
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1274 TTGCTGGTTACGCCTCTTCACGTCTCTACAAAATGTTCAAAGGAACAGAGTGGAAGAGAA 1333
Query 1261 TTGCCTTCAGAACAGCCTTCTTGTTCCCTGCAGTCGTCTCAGCTATCTTCTTTGTCCTAA 1320
| || |||||||||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 1334 TCGCTTTCAGAACAGCCTTCTTGTTTCCTGCAGTTGTGTCAGCAATCTTCTTTGTCCTAA 1393
Query 1321 ACGCACTCATCTGGGGACAAAAATCATCTGGAGCTGTTCCCTTTGGAACAATGTTTGCTC 1380
|||| |||||||||||||| || |||||||| ||||| ||||||||||||||||| || |
Sbjct 1394 ACGCTCTCATCTGGGGACAGAAGTCATCTGGGGCTGTCCCCTTTGGAACAATGTTCGC-C 1452
Query 1381 T-GATCTTCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCTTTGTTGGCGCGT-ACCTCGG 1438
| |||||||||||||||||| ||||| || ||||| ||||||||||| | || || | ||
Sbjct 1453 TTGATCTTCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTGGGG-GTTACATTGG 1511
Query 1439 ATTCAAGAAGCCACCA-CTTGATGATCCC-GTGAAAACCAACAAAATCCC-ACGTCAAAT 1495
|||||||||||| | || ||||| ||| |||||||||||||||||||| | | |||||
Sbjct 1512 GTTCAAGAAGCCAGCGGCT-GATGA-CCCAGTGAAAACCAACAAAATCCCGAGG-CAAAT 1568
Query 1496 CCCAGAGCAAGCTTGGTACATGAACCCAGTTTTCTCAATCCTCATTGGAGGAATCTTACC 1555
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1569 CCCAGAGCAAGCTTGGTACATGAACCCGGTTTTCTCAATCCTCATTGGAGGAATCTTACC 1628
Query 1556 ATTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCCATCTGGCTTAACCAGTT 1615
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1629 GTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGCTCAACCAGTT 1688
Query 1616 CTACTACATCTTCGGATTCCTCTTCCTCGTCTTTGTGATCCTTATGGTCACATGCGCTGA 1675
|||||||||||| || |||||||||||||||||||| ||||| || || || ||||| ||
Sbjct 1689 CTACTACATCTTTGGGTTCCTCTTCCTCGTCTTTGTAATCCTCATTGTGACTTGCGCCGA 1748
Query 1676 GATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACTATCTCTGGTGGTGGAG 1735
||| ||| | || |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1749 GATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTTGGTGGTGGAG 1808
Query 1736 GTCTTACCTCACCTCAGGTTCTTCTGCGGTCTATCTCTTCCTCTACGC-AGCCTTCTATT 1794
|| |||||||| ||||| || || || |||| ||||||||||| || | | ||||| |
Sbjct 1809 ATCATACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTATGCCA-CGTTCTACT 1867
Query 1795 TCTTCACAAAGCTCCAGATCACTAAGCTCGTCTCGGCCATGCTCTACTTCGGATACATGC 1854
||||||||||||| |||||||| || || ||||| || ||||| ||||| || |||||||
Sbjct 1868 TCTTCACAAAGCTTCAGATCACCAAACTGGTCTCTGCGATGCTTTACTTTGGGTACATGC 1927
Query 1855 TTATCGCCTCTTACGCGTTTTTTGTGCTGACCGGAACAATCGGGTTCTACGCTTGTCTCT 1914
| |||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||||||
Sbjct 1928 TCATCGCCTCCTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTATGCTTGTCTCT 1987
Query 1915 GGTTCACAAGGCTCATCTATTCCTCGGTAAAGATCGATT 1953
||||||||||||||||||||||||| || ||||||||||
Sbjct 1988 GGTTCACAAGGCTCATCTATTCCTCTGTTAAGATCGATT 2026
> AT1G55130.1 | Symbols: TMN6, AtTMN6 | Endomembrane protein 70
protein family | chr1:20569654-20572393 FORWARD LENGTH=2041
Length=2041
Score = 699 bits (378), Expect = 0.0
Identities = 944/1211 (78%), Gaps = 64/1211 (5%)
Strand=Plus/Plus
Query 741 CCTCAAGAAGTCGA--AAATAAGAAGGAAATTATCTTCACATATGATGTTGACTTTCAGG 798
|||||||||||||| || || || |||||| | || ||||||||||| | |||| |||
Sbjct 700 CCTCAAGAAGTCGAGGAAGGAA-AA-GAAATTGTGTTTACATATGATGTCGCCTTTAAGG 757
Query 799 AAAGTG-AAGTGAAGTGGGCGTCTAGATGGGATGCTTATCTT-CTGATGAGCGACAATCA 856
| |||| | | || ||||| || | ||||| | || ||| || |||| ||| ||||
Sbjct 758 AGAGTGTTA-TCAAATGGGCTTCGCGCTGGGACACATA-CTTGCTTATGAACGATGATCA 815
Query 857 AATTCACTGGTTCTCTATCGTCAACTCTCTGATGATCGTCCTCTTCCTTTCTGGTATGGT 916
||| |||||||| || ||| | ||||| || ||||| ||||| ||||| ||||| |||||
Sbjct 816 AATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCCTTTTCCTCTCTGGAATGGT 875
Query 917 AGCGATGATTATGCTAAGGACCCTT-TAC-CGTGACATTTCACGGTACAA-CGAGCTTGA 973
||||||||| ||| | | || | || ||| | || |||||| ||||| | |||| ||
Sbjct 876 AGCGATGATCATGATGA-GAACTTTATACAAG-GATATTTCAAACTACAATC-AGCTCGA 932
Query 974 GACTCAAGAGGAAGCTCAAGAAGAGACTGGGTGGAAACTCGTCCATGGCGATGT-TTTCA 1032
||| ||||| || ||||| ||||| || || ||||| || || ||||| ||||| ||| |
Sbjct 933 GACCCAAGACGAGGCTCAGGAAGAAACCGGATGGAAGCTTGTACATGGAGATGTCTTT-A 991
Query 1033 GGCCTCCAACCAATTC-AGATCTTCTCTGCGTCTATGTTGGCACAGGTGTCCAG-TGTTT 1090
|| | || | || || | | | || || || ||||| ||||||||||| ||| | |||
Sbjct 992 GGACGCCCATGAACTCTGGGT-TACTGTGTGTTTATGTCGGCACAGGTGTTCAGAT-TTT 1049
Query 1091 AGGCATG-GTACTTGTCACTATGATCTTCGCCA-TGCTCGGATTTC-TATCACCTTCCAA 1147
|| ||| | ||||| || |||||||| | || |||| || ||| |||| || |||||
Sbjct 1050 CGGTATGACT-CTTGTGACAATGATCTTTG-CATTGCT-GGGCTTCTTATCTCCATCCAA 1106
Query 1148 CCGTGGAGGTCTTATGACAGCCATGCTCCTTC-TCTGGGTCTTCATGGGCCTCTTTGCCG 1206
| | ||||| || | ||| |||||| | | || | ||||| ||||||||| | ||||| |
Sbjct 1107 CAGAGGAGGGCTCACGACTGCCATGGTTC-TCTTATGGGTATTCATGGGCATATTTGCTG 1165
Query 1207 GTTACGCCTCTTCACGTC-TCTACAAAATGTTCAAA-GGAACAGAATGGAAGAGAATTGC 1264
||||| | ||||| |||| || |||||||||||||| |||| || ||||| ||||| |
Sbjct 1166 GTTACTCATCTTCTCGTCTTC-ACAAAATGTTCAAAGGGAA-TGAGTGGAAAAGAATCAC 1223
Query 1265 CTT-CAGAACAGCCTTCTTG-TTCCCTGCAGT-CGTC-TCAGCTATCTTCTTTGTCCTAA 1320
||| || || || ||| || ||||| | | | | || || || |||||||| || || |
Sbjct 1224 CTTGAAG-ACTGCATTCATGTTTCCCGGTA-TAC-TCTTC-GCGATCTTCTTCGTTCTCA 1279
Query 1321 ACGCACTCATCTGGGGACAAAAATCATCTGGAGCTGTTCCCTTTGGAACAATGTTTGCTC 1380
|| ||||||| |||||| || |||||||||||| |||||||| | |||||||||||||
Sbjct 1280 ACACACTCATATGGGGAGAACGATCATCTGGAGCCATTCCCTTTAGTACAATGTTTGCTC 1339
Query 1381 TGATCT-TCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCTTTGTTGG-CGCGTACCTCGG 1438
|| ||| | ||||||||||||||||| ||||| || ||||| |||| || ||||||||
Sbjct 1340 TGGTCTGT-CTCTGGTTTGGAATCTCTGTCCCACTAGTCTTCATTGGTAGC-TACCTCGG 1397
Query 1439 AT-TCAAGAAGCCACCACTTGATGATCCCGTGAAAACCAACAAAATCCC-ACGTCAAATC 1496
| ||| || ||| || | || ||||| || ||||| ||||| ||||| | | ||| |
Sbjct 1398 -TCACAAAAAACCAGCAATCGAAGATCCAGTCAAAACTAACAAGATCCCGA-GACAAGTA 1455
Query 1497 CCAGAGCAAGCTTGGTACATG-AACC-CAGTTTTCTCAATCCTCATTGGAGGAAT-CTTA 1553
||||||||| ||||||||||| |||| |||||| | || || |||||||| || |||
Sbjct 1456 CCAGAGCAACCTTGGTACATGAAACCTGGGTTTTC-C-ATACTAATTGGAGGCATCCTT- 1512
Query 1554 CCATTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCCATCTGGCTTAACCAG 1613
||||| || ||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1513 CCATTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCAATCTGGCTCAATCAA 1572
Query 1614 TTCTACTACATCTTCGGATTCCTCTTCCTCGTCTT-TGTGATCCTT-ATGGTCACATGCG 1671
||||||||||||||||||||||||||| |||| || | ||||| || || || || ||||
Sbjct 1573 TTCTACTACATCTTCGGATTCCTCTTCATCGTGTTCT-TGATC-TTGATTGTGACCTGCG 1630
Query 1672 CTGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACTATCTCT-GGTGG 1730
| |||||||| ||||| ||||||||||| ||||| |||||||||||||| | | ||||
Sbjct 1631 CAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTA-CAATTGGTGT 1689
Query 1731 TGGAG-GTCTTACCTCACCTCAGGTTCTTCTGCGGTCTATCTCTTCCTCTACGCAGCCTT 1789
||||| | | |||||||| ||||| || ||| | | || |||||||||||| | | |||
Sbjct 1690 TGGAGAG-CATACCTCACATCAGGCTCATCTTCACTTTACCTCTTCCTCTACTCCGTCTT 1748
Query 1790 CTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTC-GGCCATGCTCTACTTCGGAT 1848
||| |||||||||||||| ||||| | || || || || || ||||||||||||| |
Sbjct 1749 CTACTTCTTCACAAAGCTTGAGATCTCAAAACTGGTATCAGGAG-TGCTCTACTTCGGGT 1807
Query 1849 ACATGCTTATCGCCTCTTACGCGTTTTTTGTGCTGACCGGAACAATCGGGTTCTACGCTT 1908
||||| | || ||||||| ||||||| ||||| ||||| ||||||| |||||||| |
Sbjct 1808 ACATGATCATTATCTCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTCTACGCAT 1867
Query 1909 GTCTCTGGTTC 1919
|| | ||||||
Sbjct 1868 GTTTGTGGTTC 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97840862205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5