BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942073
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25160.1 | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687... 1061 0.0
> AT5G25160.1 | Symbols: ZFP3 | zinc finger protein 3 | chr5:8687457-8688415
FORWARD LENGTH=959
Length=959
Score = 1061 bits (574), Expect = 0.0
Identities = 693/748 (93%), Gaps = 17/748 (2%)
Strand=Plus/Plus
Query 6 TCCCTTTTTAGCTCTCATGGACGCTTCCATAGTTTCCTCATCCACAGCTTTTCCATATCA 65
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 52 TCCCTTTTTAGCTCTCATGGACGCTTCAATAGTTTCCTCATCCACTGCTTTTCCATATCA 111
Query 66 AGATTCTCTAAACCAGAGCATCAAATACGAAGACAA-AGACGTTCATGATCCTAGTCAAG 124
|||||||||||||||||||||| || ||||||| || |||||||||| || ||||||| |
Sbjct 112 AGATTCTCTAAACCAGAGCATCGAAGACGAAGA-AAGAGACGTTCATAATTCTAGTCACG 170
Query 125 AACTCAATCTCATCGACTGCATAGACGATACAGCGAGTATCGTTAACGGATCTACAACAT 184
|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||
Sbjct 171 AACTCAATCTCATCGACTGCATAGACGACACAACGAGTATCGTTAACGAATCTACAACAT 230
Query 185 CCACAGAACAAAAGCTTTTTTCATGTAACTACTGTCAAAGAACTTTCTATAGCTCACAAG 244
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 231 CCACAGAACAAAAGCTTTTCTCATGCAACTATTGTCAAAGAACTTTCTATAGCTCACAAG 290
Query 245 CCCTTGGTGGACACCAAAACGCACACAAGAGAGAGAGGACGTTGGCGAAGAAAGGACAAC 304
| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 291 CACTTGGTGGTCACCAAAACGCACACAAGAGAGAGAGAACGTTGGCGAAGAGAGGACAAC 350
Query 305 GTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GTATGGCAGCGTCAGCCTCAGCTTTTGGACATCCTTACGGTTTCTCTCCACTTCCTTTCC 410
Query 365 ACGGACTA-TACAACAAC-AGTAGGTCTTTGGGGATTCAAGCGCATTCGATGAGCCACAA 422
|||||| | ||||||||| | ||||||||| ||||| |||||||||||||| ||||||||
Sbjct 411 ACGGAC-AGTACAACAACCA-TAGGTCTTTAGGGATCCAAGCGCATTCGATAAGCCACAA 468
Query 423 GCTAAGTTCATATAGCGGGTTTGGTGGTCACTACGGTCAGGTCAACTGGTCAAGACTTCC 482
||||||||| |||| |||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 469 GCTAAGTTCTTATAACGGGTTTGGTGGTCACTATGGTCAGATCAACTGGTCAAGACTTCC 528
Query 483 ATTTGATCAACAACCAGCCATAGGTAAATTGCCTTCAATGGAGAATTTTCATCATCATCA 542
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 529 ATTTGATCAACAACCAGCCATAGGTAAATTTCCCTCAATGGATAATTTTCATCATCATCA 588
Query 543 TCA---GATGATGATG--G-CTCCTTCAGTAAATTCTCGGACCAATAACATCGATAGACC 596
||| |||||||||| | |||||||||||||||| ||| |||||||||||||||| ||
Sbjct 589 TCATCAGATGATGATGATGGCTCCTTCAGTAAATTCACGGTCCAATAACATCGATAGCCC 648
Query 597 GAGCAACACAGGAAGAATTTTAGAAGGTTCACCGACTCTTGAACAGTGGCACGGAGACAA 656
|||||||||||| | || ||||||| ||||||||||||||||| ||||||||||||||
Sbjct 649 AAGCAACACAGGACGGGTTCTAGAAGGGTCACCGACTCTTGAACAATGGCACGGAGACAA 708
Query 657 AG--T-GTTGTTAAGTTCTAA-TCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA 712
|| | |||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGGATTGTTGTTAAGTAC-AAGTCATCATGAAGAGCAGCAGAAACTTGACTTGTCCCTCA 767
Query 713 AGCTTTGAGATTCTTTTTCTTGATTCTT 740
||||||||||||||||||||||||||||
Sbjct 768 AGCTTTGAGATTCTTTTTCTTGATTCTT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35917415105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5