BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942074
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25170.1 | Symbols: | PPPDE putative thiol peptidase family... 1112 0.0
> AT5G25170.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr5:8693137-8695095 FORWARD LENGTH=1434
Length=1434
Score = 1112 bits (602), Expect = 0.0
Identities = 668/700 (95%), Gaps = 3/700 (0%)
Strand=Plus/Plus
Query 1 TCTTTCTTCTGTTAAAG-AAAGATGTTGTGTAGAATGGTGGTGGTGACTGGCCGGAAAAA 59
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 TCTTTCTTCTCTTAAAGAAAAGATGTTGTGTAGAATGGTGGTGGTGACTGGCCGGAAAAA 158
Query 60 GAAACTCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATCAATGGTTA 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 159 GAAACCCGGTTCGGTTCCGGTTTATCTGAATGTATACGATCTCACACCCATCAATGGCTA 218
Query 120 TGCTTACTGGTTAGGACTTGGGATCTATCACTCTGGTGTTGAAGTTCATGGGGTTGAATA 179
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 219 CGCTTACTGGTTAGGACTTGGGATCTATCACTCTGGTGTTGAAGTTCATGGAGTTGAATA 278
Query 180 TGGTTTCGGAGCTCACGAGCATTCGACAACGGGGATTTTCGAGGTGGAGCCGAAGCAATG 239
|||||| ||||||||||| |||||||| || ||||| ||||||||||| |||||||||||
Sbjct 279 TGGTTTTGGAGCTCACGATCATTCGACTACCGGGATATTCGAGGTGGAACCGAAGCAATG 338
Query 240 TCCGGGTTTTACATTCAGGAAGTCTATATTGATTGGAAGAACTGATTTGGATCCTGAAAA 299
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 339 TCCGGGTTTCACATTTAGGAAGTCTATATTGATTGGAAGAACTGATTTAGATCCTGAAAA 398
Query 300 CGTTCGTGCT-TTTATGGAGAAACTTGCGGAAGAATATAGTGGAAACACTTACCATTTGA 358
|||||||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 399 CGTTCGTG-TCTTTATGGAGAAACTTGCGGAAGAATATAGTGGAAACAGTTATCATTTGA 457
Query 359 TCACTAAGAATTGCAATCACTTCTGCAATGATGTTTGTGTGCAATTGACTCGAAGATCGA 418
| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 458 TTACTAAGAATTGCAATCACTTTTGCAATGATGTTTGTGTGCAACTGACTCGAAGATCGA 517
Query 419 TCCCTAGTTGGGTTAACCGTCTTGCTCGCTTCGGTTTGTTTTGCAATTGTGTTCTGCCGG 478
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 518 TCCCTAGTTGGGTTAACCGTCTTGCTCGCTTTGGTTTGTTTTGCAACTGTGTTCTGCCGG 577
Query 479 CGGAGCTGAATGAGACAAAGGTGAGGCAGGTGAGATCAAAGGAAGAGAAGATTCCGGAAG 538
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CGGAGTTGAATGAGACTAAGGTGAGGCAGGTGAGATCAAAGGAAGAGAAGATTCCGGAAG 637
Query 539 CAGAGAAGAAGAAACTTCGGAGTAGATCAAGTAGATTTCCACCTGGCCCTTCGCTTTCTT 598
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 638 TAGAGAAGAAGAAACTTCGGAGTAGATCAAGTAGGTTTCCACCTGGTCCTTCGCTTTCTT 697
Query 599 CATCGGGTTCTTTAAACCGAAGCAGAAGAGGGGAAAGGAGAAGACAATGTCTTCCTCCAT 658
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 698 CGTCGGGTTCTTTAAACCGAAGCAGAAGAGGAGAAAGGAGAAGACAATGTCTTCCTCCAT 757
Query 659 CACCAACTGTGAGTGTTTAGCTCTAGTCCTAGTAATATTA 698
||||||||||||||||||||||||||||||||||| ||||
Sbjct 758 CACCAACTGTGAGTGTTTAGCTCTAGTCCTAGTAAAATTA 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5