BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942084
Length=1144
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1895 0.0
AT2G25260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 411 1e-113
> AT5G25265.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured
cell, leaf; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G25260.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:8754553-8756948
REVERSE LENGTH=1435
Length=1435
Score = 1895 bits (1026), Expect = 0.0
Identities = 1106/1144 (97%), Gaps = 7/1144 (1%)
Strand=Plus/Plus
Query 3 AATCTCAA--TCTCTCTCAAATGGGTTGTGGTGGAACTTTGTTCTACCCACTTCTCATAA 60
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AATCTCAATCTCTCTCTCAGATGGGTTGTGGTGGAACTTTGTTCTACCCACTTCTCATAA 133
Query 61 CTCTCTCCGTTGCTCTAATCACTTACAACATCATCATCTCCGCTAATGCTCCTCTCAAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTCTCTCCGTTGCTCTAATCACTTACAACATCATCATCTCCGCTAATGCTCCTCTCAAAC 193
Query 121 AAGGCTTCCCCGGCCGATCTTCATCTTCCGATATCTCCATTGACCCAGTCATCGAATTAC 180
|||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 194 AAGGCTTCCCAGGCCGATCTTCTTCCTCCGATATCTCCATTGACCCAGTCATCGAATTAC 253
Query 181 CACGTGGCGGCGGATCCAGAAACCGCAACAATGGTAAAAGGCCGAGACTTTTCCACACGG 240
|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 254 CACGTGGCGGCGGATCCAGAAA---CAACGATGGTAAAAGGATAAGACTTTTCCACACGG 310
Query 241 CGGTGACTGCGTCTGATTCCGTCTACAACACTTGGCAATGTAGAGTTATGTACTATTGGT 300
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 311 CGGTGACGGCGTCTGATTCCGTCTATAACACTTGGCAATGTAGAGTTATGTACTATTGGT 370
Query 301 TCAAAAAGGTTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGGTGGGTTTACTCGGATCT 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCAAAAAGATTCAAGCTTCTGCTGGACCCGGTTCTGAAATGGGTGGGTTTACTCGGATCT 430
Query 361 TGCATTCTGGTAAACCGGATCAGTATATGGATGAGATTCCTACTTTTGTTGCTCAGCCTT 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGCATTCCGGTAAACCGGATCAGTATATGGATGAGATTCCTACTTTTGTTGCTCAGCCTT 490
Query 421 TACCTTCTGGGATGGATCAGGGTTATATTGTGTTGAATAGGCCATGGGCATTTGTACAAT 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 491 TACCTTCTGGGATGGATCAGGGTTATGTTGTGTTGAATAGGCCATGGGCATTTGTACAAT 550
Query 481 GGCTTCAACAAACAGATATTAAAGAAGATTATATTTTGATGTCTGAGCCTGATCATATCA 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GGCTTCAACAAACAGATATAAAAGAAGATTATATTTTGATGTCTGAGCCTGATCATATCA 610
Query 541 TTGTTAAACCTATACCAAATTTAGCTAAAGATGGGCTTGGAGCTGCTTTTCCTTTCTTTT 600
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 611 TTGTTAAACCTATACCAAATTTGGCTAAAGATGGGCTTGGAGCTGCGTTTCCTTTCTTTT 670
Query 601 ACATTGAACCGAAAAAGTATGAGAAGGTGTTGAGGAAGTATTATCCAGAAGAGAGAGGAC 660
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 671 ACATTGAACCGAAAAAGTATGAGAAGGTGTTGAGGAAGTATTATCCTGAAGTGAGAGGAC 730
Query 661 CGGTTACTAATATCGATCCGATAGGAAACTCTCCTGTCATTGTGGGAAAGGATGCTTTAA 720
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 731 CGGTTACTAATATCGATCCGATAGGAAACTCTCCTGTCATTGTTGGAAAGGATGCTTTGA 790
Query 721 AGAAGATAGCTCCAACTTGGATGAATGTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAG 780
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AGAAGATTGCTCCAACTTGGATGAATGTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAG 850
Query 781 ACAAGGCTTTTGGATGGGTTCTTGAAATGTATGCTTATGCTGTCTCATCTGCATTGCATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 ACAAGGCTTTTGGATGGGTTCTTGAAATGTATGCTTATGCTGTCTCATCTGCATTGCATG 910
Query 841 GTGTTAGCAATATTCTACACAAAGACTTCATGATTCAGCCTCCATGGGATATAGAGGTTG 900
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 911 GTGTTAGCAATATTCTACACAAAGACTTCATGATTCAGCCACCATGGGATATAGAGGTTG 970
Query 901 GTGACAAGTACATCATACACTACACTTATGGATGCGACTACGATATGAATGGTAAATTAA 960
|||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||
Sbjct 971 GTGACAAGTACATCATACACTACACTTATGGATGTGATTATGATATGAAGGGTAAATTAA 1030
Query 961 CCTATGGGAAAATCGGGCAATGGAGATTTGACAAAAGATCGTATGATAGCACACCACCAC 1020
| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1031 CTTATGGGAAAATCGGGGAATGGAGATTTGACAAAAGATCGTATGATAGCAAACCACCAC 1090
Query 1021 CAAGGAACCTTACAATGCCTCCACCTGGTGTTTCACAAAGTGTGGTAACACTAGTGAAGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CAAGGAACCTTACAATGCCTCCACCTGGTGTTTCACAAAGTGTGGTAACACTAGTGAAGA 1150
Query 1081 TGATAAATGAAGCCACGGCCAACATACCAAACTGGGGATCATAGAGAGAGACAAAGAGAA 1140
||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||
Sbjct 1151 TGATAAATGAAGCCACGGCCAACATACCAAACTGGGGATCATA-A-AGAGACAGAGAGAG 1208
Query 1141 AGAA 1144
||||
Sbjct 1209 AGAA 1212
> AT2G25260.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G25265.1); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr2:10755524-10757772 REVERSE LENGTH=1176
Length=1176
Score = 411 bits (222), Expect = 1e-113
Identities = 701/925 (76%), Gaps = 62/925 (7%)
Strand=Plus/Plus
Query 224 GAGACT-TTTCCACACGGCGGTGACTGCGTCTGATTCCGTCTACAACACTTGGCAATGTA 282
|||||| ||| |||||||||||||| || | |||||||| |||| ||| ||||| |||
Sbjct 189 GAGACTGTTT-CACACGGCGGTGACAGCCACGGATTCCGTGTACAGCACGTGGCAGTGTC 247
Query 283 GAGTTATGTACTATTGGTTCAAAAAGGTTCAAGCTTCTG-CTGGACCCGGTTCTGAAATG 341
| || ||||| ||||||| | || |||||| || | | | |||||| || || |||
Sbjct 248 GGGTCATGTATTATTGGTAC-AACAGGTTC-AG----GGAC-GAACCCGGGTCGGATATG 300
Query 342 GGTGGGTTTACTCGGATCTTGCATTCTGGTAAACCGGATCAGTA-T-ATGGATGAGATTC 399
|| |||| ||| |||||||||||||| ||| ||| ||| | | | ||||||||||| |
Sbjct 301 GGCGGGTATACCCGGATCTTGCATTCGGGTCGACCCGAT--GGACTCATGGATGAGATCC 358
Query 400 CTACTTTTGTTGCTCAGCCT-TTACCTTCTGG-GATGGATC-AGGGTTATATTGTGT-TG 455
||||||| |||||| | ||| || || || || | | || | |||| ||| |||| | |
Sbjct 359 CTACTTTCGTTGCTGACCCTCTT-CCCTCCGGTG-TTGA-CAAGGGATATGTTGT-TCTA 414
Query 456 AATAGGCCATGGGCATTTGTACAATGGCTTCAACAAACAGATATTA-AAGAAGATTATAT 514
|||||||| ||||| ||||| ||||||||||||||| || ||| || | |||||||| ||
Sbjct 415 AATAGGCCTTGGGCCTTTGTTCAATGGCTTCAACAAGCACATA-TAGAGGAAGATTACAT 473
Query 515 TTTGATGTCTGAGCCTGATCATATCATTGTTAAACCTATACCAAATTTAGCTAAAGATGG 574
| | ||| | || |||||||||||||| |||||||| |||||||| |||||| ||
Sbjct 474 TCTCATGGCGGAACCTGATCATATCATAGTTAAACCGATACCAAACCTAGCTAGAGGCAA 533
Query 575 GCTTG-GAGCTGC-TTTTCCTTTCTTTTACATTGAACCGAAA-AAGTATGAGA-AGGTGT 630
|| | | ||||| ||| ||||| || ||||||||||| ||| || ||||| | ||| |
Sbjct 534 TCTCGCG-GCTGCGTTTCCCTTT-TTCTACATTGAACC-AAAGAAATATGA-ATCGGT-T 588
Query 631 -TGAG-GAAGTATTATCCAGAAGAGAGA-GGACCGGTTACT-AA-TATCGATCCGATAGG 685
| | || | || ||| |||||| | ||||| || | || |||||||| || ||
Sbjct 589 CTCCGCAAATTCTTCCCCA-AAGAGA-ATGGACC-AATA-TCAAGAATCGATCCCATCGG 644
Query 686 AAACTCTCCTGTCATTGTGGGAAAGGATGCTTTAAAGAAGATAGCTCCAACTTGGATGAA 745
|| ||||| || || || ||| |||| |||| ||| || |||||||| ||||||||
Sbjct 645 GAATTCTCCAGTGATCGTCACTAAGAATGCATTAATGAAAATTGCTCCAACATGGATGAA 704
Query 746 TGTTTCTTTGGCTATGAAGAAGGATCCTGAAGCAGACAAGGCTTTTGGATGGGTTCTTGA 805
||||||||||||||||||||| || || || |||| || |||||||| ||||| |||||
Sbjct 705 TGTTTCTTTGGCTATGAAGAATGACCCACAAACAGATAAAGCTTTTGGTTGGGTCCTTGA 764
Query 806 AATGTATGCTTATGCTGTCTCATCTGCATTGCATGGTGTTAGCAATATTCTACACAAAGA 865
||||||||| |||||||| || ||||| || || || || ||||| ||||||||||| ||
Sbjct 765 AATGTATGCATATGCTGTTTCTTCTGCGTTACACGGCGTGAGCAACATTCTACACAAGGA 824
Query 866 CTTCATGATTCAGCCTCCATGGGATA-T-AGAGGTTGGTGACAAGTACATCATACACTAC 923
|||||||||||||||||| ||||| | | | | | ||| || ||| ||||| |||
Sbjct 825 CTTCATGATTCAGCCTCCTTGGGACACTGAAACAAAGAAGAC--GTTCATAATACATTAC 882
Query 924 ACTTATGGATGCGACTACGATATGAATGGTAA-ATTAACCTATGGGAAAATCGG-GCAAT 981
||||| || || || | ||| ||||| || || || | || ||||| || || | |||
Sbjct 883 ACTTACGGCTGTGATTTCGACATGAAGGGGAAGATGATGGTA-GGGAAGATTGGAG-AAT 940
Query 982 GGAGATTTGACAAAAGATCGTATG---ATAGCACACCACCACCAAGGAACCTTACAATGC 1038
||||||| || ||| | || || | ||| | |||||| ||||| || || ||| |||
Sbjct 941 GGAGATTCGATAAACGGTCTTACGGGGATA--A-ACCACCCCCAAGAAATCTCACACTGC 997
Query 1039 CTCCACCT-GGTGTTTCACAA-AGTGTGGTAACACTAGTGA-AGATGATAAATGAAGCCA 1095
|||| || |||||| | | | || ||||| ||| | |||| | |||||||| ||||| |
Sbjct 998 CTCC-CCGAGGTGTTCC-CGAGAGCGTGGTGACATTGGTGACA-ATGATAAACGAAGCTA 1054
Query 1096 CGGCCAACATACCAAACTGGGGATC 1120
| || || || || ||||||| |||
Sbjct 1055 CTGCTAATATTCCCAACTGGGAATC 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56124209310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5