BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942093
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 636 0.0
AT5G25290.1 | Symbols: | F-box family protein with a domain of... 440 2e-122
AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6... 134 3e-30
> AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana
protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast
hits to 224 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093
FORWARD LENGTH=1434
Length=1434
Score = 636 bits (344), Expect = 0.0
Identities = 449/499 (90%), Gaps = 9/499 (2%)
Strand=Plus/Plus
Query 507 AGACGAGAAGAAGAAAGAATTCGTTGTTGTGTGGTTTTTCGACAAAGGTACCGAATATTT 566
|||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||| |
Sbjct 288 AGACGAGAAGAAAAAAGAATACATTGTAGTGTGGTTTTTCGACAAAGGTACCGAATATAT 347
Query 567 AGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGTTGG 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 348 AGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGTTTG 407
Query 627 TAAAGAGTTACAAGGCTTATATGATATGGTACTTTATGGTGGTGACAGTCTTTACATCTC 686
|||||||||||||| ||||||||||||| |||| |||||||| ||| |||||| |||||
Sbjct 408 TAAAGAGTTACAAGACTTATATGATATGTTACTCCATGGTGGTAACAATCTTTATATCTC 467
Query 687 AACCACTCGTCAATCGATTCAAAAGCTTA-ACTTTTTTGGACAAGAAGGTTTCATTGATG 745
|| ||||||||||| |||| ||||||| | ||||||| | ||||||||||||||||||
Sbjct 468 AAAGACTCGTCAATCTATTCGGAAGCTTAGA-TTTTTTGAAGAAGAAGGTTTCATTGATG 526
Query 746 TCTCCAACAGTGAGATATTACCATTTCGTAAAATCTCATTTTATC-TCCCAGATGGAGCA 804
|| ||| ||||||||||||||||||||||||||||| ||||| | | |||||||||
Sbjct 527 TCGACAATAGTGAGATATTACCATTTCGTAAAATCTCCTTTTA-CATT---GATGGAGCA 582
Query 805 AGATTTGGCAATAACATTGCTGTTACAATATCAGGAGAGGTTTTGTTGGTTCAGAACTTC 864
|||||| | ||||||||||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct 583 AGATTTAGTAATAACATTGCCGTTACAACATCAAGAGAGGTTTTGTTGGTTCAGAACTTC 642
Query 865 TTTTACGAGGCAACAAGATATAGGAGCTTCCGTCTGTACAAGAAAGATCCTAATCCAGAT 924
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 643 TTTTACGAGACAACAAGATATAGGAGCTTCCGTTTGTACAAGAAAGATCCTAATCCGGAC 702
Query 925 TTGAATACTATTATCAACAACCCGTACCCGATGGTTGAGGTATATTCTCTAGGTGATGAG 984
|||||| ||| |||||||||||| ||||||||||||||| ||| ||||||||||||||
Sbjct 703 TTGAATGCTACTATCAACAACCCCTACCCGATGGTTGAGTTATGTTCTCTAGGTGATGT- 761
Query 985 GCTCTGCTTCTAGATTTGG 1003
|||||||||| |||||||
Sbjct 762 -CTCTGCTTCTGGATTTGG 779
Score = 255 bits (138), Expect = 6e-67
Identities = 195/222 (88%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 208 GGTGGTTGTGCTATGTACAACCCGGATGAAGC--AAGAATTTACAGAACGAAGAGAGGCT 265
|||||||||||||| ||||||||||| ||||| ||| | ||||| ||| || |||| ||
Sbjct 73 GGTGGTTGTGCTATATACAACCCGGACGAAGCTAAAG-A-TTACAAAACAAAAAGAGACT 130
Query 266 TTTCCGGGATTCGATTCTTGGCAAACTCAGGTAACTGGTTCTTAGTTCTAGATTCTAAG- 324
|| ||||||||||||||||||||||||| |||||||||||| || ||||||||| |
Sbjct 131 CCTCAGGGATTCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCT-CGT 189
Query 325 TCCAATATCTATATCATAGATTTGTTTAGCGAGAAAAAGATCGATCTTCCACCTCTAGAG 384
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 190 TCCAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAA 249
Query 385 TCAATGAAGGGTGGCCTTTTTAGTCTTGAGCAAGTAGGAGAC 426
||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 250 TCAATCAAGAATGGCCTTTATAGTCTTGAGCAAGTAGGAGAC 291
Score = 130 bits (70), Expect = 4e-29
Identities = 90/100 (90%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 1091 GGAAACATTCATGTCTGGACATCTGTGTGTTCAATCTTGCAACAAAGAAACTCAAACGCT 1150
|||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| ||||| |
Sbjct 785 GGAAACGTTCTTGTCTGGACATGTGTATGTTCAATCTTGTGACAAAGAAACTTAAACGAT 844
Query 1151 TCCCGGGTCTCTCCAACTTAAAGCTCACGGATGCTCGATG 1190
|||||| ||| |||||||||||||||||||||||||||||
Sbjct 845 TCCCGGATCTTTCCAACTTAAAGCTCACGGATGCTCGATG 884
> AT5G25290.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr5:8778592-8779785 FORWARD
LENGTH=1194
Length=1194
Score = 440 bits (238), Expect = 2e-122
Identities = 565/715 (79%), Gaps = 54/715 (8%)
Strand=Plus/Plus
Query 45 CTGGTCGGAGCTCCCTATAGACATCTTGAGATCTGTGTTCGAACGTTTCAGTTTTGTGGA 104
|||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||| ||
Sbjct 39 CTGGTCGGAGATTCCTATGGACATCTTGAGATCAGTGTTCGAACGTTTGAGTTTTGTCGA 98
Query 105 TTTTCACCGCGCTAAGATCGTGTGTTCGAATTGGTATTCGTGTTCCAAACAATCGTTGCT 164
| | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||| ||
Sbjct 99 TCTCCACCGCGCTAAGATCGTGTGTTCGCATTGGTATTCATGTTCGAAACAATCGTTTCT 158
Query 165 ACGAAAAACCGGATCT-CCGTGGTTGATTCTGTTTTTAAACGATGGTGGTTGTGCTATGT 223
||||||||| ||||| || ||| |||||||||||| | | ||||||| |||| || |||
Sbjct 159 CCGAAAAACCAGATCTCCCTTGG-TGATTCTGTTTTCAGATGATGGTGATTGTACTTTGT 217
Query 224 ACAACCCGGATGAAGCAAGAATTTACAGAACG-AAGAGAGGCTTTTC-CGGGATTCGATT 281
| ||||| || ||||| || |||||| || | ||||||| ||| || || | ||||||
Sbjct 218 ATAACCCTGAGGAAGCTAGGGTTTACA-AAAGTAAGAGAGACTTATCAAGGTA-TCGATT 275
Query 282 CTTGGCAAACTCAGGTAACTGGTTCTTAGTTCTAGATTCTA-AGTCCAATATCTATATCA 340
| | ||||||||||||||||||||||||||||| ||| ||| | |||||| |||||||||
Sbjct 276 CCTAGCAAACTCAGGTAACTGGTTCTTAGTTCTTGATCCTAGA-TCCAATCTCTATATCA 334
Query 341 TAGATTTGTTTAGCGAGAAAAAGATCGATCTTCCACCTCTAGAGTCAATGAAGGGTGGCC 400
||||||||||||||||||| |||||| |||||||||||||||| ||| | || ||| |
Sbjct 335 TAGATTTGTTTAGCGAGAAGAAGATCAATCTTCCACCTCTAGATTCATTCAAAGGTTACA 394
Query 401 TTTTTAGTCTTGAGCAAGTAGGAGAC-ACGGCA-TTCAAGGCG--AG-ATTA-AATAATG 454
| || |||| || |||| |||| | | | | ||||||| | || || |||| |
Sbjct 395 AATATAATCTTAAGAAAGTTGGAG-CTA-GAAAATTCAAGGAGCTAGTATCCGAATA-TC 451
Query 455 GTAGTGCATATTC-ATTCCATAATGCGGAAG-ATCTGAGAGGTCTTTTGTGGGTAGACGA 512
| | | | ||| | |||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 452 CCACTTC-T-TTCCA--CCATCATGCG-AAGGATCTGAGAGGTCTTTTGTGGGTAGACGA 506
Query 513 GAAGAA-GAAAGAATTCGTTGTTGTGTGGTTTTTC-G-A-CAAAGG-TACCGA---ATA- 563
|||||| ||| || | ||||||||| |||| ||| | | ||| | ||| || ||
Sbjct 507 GAAGAAAGAA-GAGTACGTTGTTGTATGGTACTTCCGTAACAA-GTATAC-GATGGATTC 563
Query 564 TTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGT 623
|||||||||||||||||||||||||||||||||||| || || || | || | | |||
Sbjct 564 TTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGTGAGATGCC-A-AC-ACACTATG- 619
Query 624 TGGTAAAGAGTTACAAGGCTTATATGATATGGTACTTTATGGTGGTGAC-AGTCTTTACA 682
||| | | | ||| | || |||||||||||| | |||||||| | | |||||
Sbjct 620 -GGTTAC-A-TGACA----T-ATCTGATATGGTACTACAACGTGGTGACCA-TATTTACC 670
Query 683 TCTCAACCACTCGTCAAT-CGATTCAAAAGCTTAACTTTTT-TGGACAAGAAGGT 735
||||||| | | || ||| | ||||||| ||| | ||| | | |||||||||||
Sbjct 671 TCTCAACGAGTTGTAAATACC-TTCAAAAACTTGA-TTTGTCTAGACAAGAAGGT 723
> AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6648909
REVERSE LENGTH=822
Length=822
Score = 134 bits (72), Expect = 3e-30
Identities = 273/364 (75%), Gaps = 37/364 (10%)
Strand=Plus/Plus
Query 205 GATGGTGGTTGTGCTATGTACAACCCGGATGAAG--CA-AGAATTTACAGA-ACGAAGAG 260
|||||| | ||||||| ||||| || || |||| | ||| |||||| | || |||||
Sbjct 16 GATGGTTG-TGTGCTA--TACAATCCAGAAGAAGATAATAGAGTTTACA-ATACAAAGAG 71
Query 261 AGGCTTTTCCGGGATTCGATTCTTGGCAAACTCAGGTAACTGGTT-CTTAGTTCTAGAT- 318
|| |||||| || ||| ||| | |||||||||||||||| ||| || | |||||
Sbjct 72 AGACTTTTCAAAGACTCGTTTCCTAGCAAACTCAGGTAACTTGTTCCTCA-CGGTAGATG 130
Query 319 TCT-AAGTCCAATATCTATATCATAGATTTGTTTAGCGAGAAAAAGA-TCGATCTTCCAC 376
| | || |||||| |||||||||||||||||||||||||||| | || || |||| ||||
Sbjct 131 T-TGAA-TCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGA-GAATCAATCTCCCAC 187
Query 377 CTCTAGAGTCAATG-AAGGGTGGCCTTTTTAGTCTTGAGC-AAGTAGGAGACACGGCATT 434
|| |||| ||| || |||| |||||||| |||| ||| || ||||||| | || |||
Sbjct 188 CTTTAGACTCAGTGGAAGG----CCTTTTTACTCTTAAGCGAA-TAGGAGATAAGG-ATT 241
Query 435 -C-AAGGCGAGATTAAATA-ATGGTAG-T--GCATATTCATTCCATAATGCGGA-AGATC 487
| ||| || ||| | || | ||| | | || | ||| |||| || | ||
Sbjct 242 TCGAAGA-GAAATTTACTAGACC-TAGCTTTGGTTACAGAAACCAGAATGTGGTTA-ATT 298
Query 488 TGAGAGGTCTTTTGTGGGTAGACGAGAAGAAGAAAGAAT--T-CGTTGTTGTGTGGTTTT 544
|||||||||||||||||||||| ||| |||| |||||| | | ||||||||||||||
Sbjct 299 TGAGAGGTCTTTTGTGGGTAGATGAGGAGAATAAAGAAGAATACACTGTTGTGTGGTTTT 358
Query 545 TCGA 548
||||
Sbjct 359 TCGA 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70330963545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5