BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942093 Length=1427 Score E Sequences producing significant alignments: (Bits) Value AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 636 0.0 AT5G25290.1 | Symbols: | F-box family protein with a domain of... 440 2e-122 AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6... 134 3e-30 > AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast hits to 224 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093 FORWARD LENGTH=1434 Length=1434 Score = 636 bits (344), Expect = 0.0 Identities = 449/499 (90%), Gaps = 9/499 (2%) Strand=Plus/Plus Query 507 AGACGAGAAGAAGAAAGAATTCGTTGTTGTGTGGTTTTTCGACAAAGGTACCGAATATTT 566 |||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||| | Sbjct 288 AGACGAGAAGAAAAAAGAATACATTGTAGTGTGGTTTTTCGACAAAGGTACCGAATATAT 347 Query 567 AGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGTTGG 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 348 AGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGTTTG 407 Query 627 TAAAGAGTTACAAGGCTTATATGATATGGTACTTTATGGTGGTGACAGTCTTTACATCTC 686 |||||||||||||| ||||||||||||| |||| |||||||| ||| |||||| ||||| Sbjct 408 TAAAGAGTTACAAGACTTATATGATATGTTACTCCATGGTGGTAACAATCTTTATATCTC 467 Query 687 AACCACTCGTCAATCGATTCAAAAGCTTA-ACTTTTTTGGACAAGAAGGTTTCATTGATG 745 || ||||||||||| |||| ||||||| | ||||||| | |||||||||||||||||| Sbjct 468 AAAGACTCGTCAATCTATTCGGAAGCTTAGA-TTTTTTGAAGAAGAAGGTTTCATTGATG 526 Query 746 TCTCCAACAGTGAGATATTACCATTTCGTAAAATCTCATTTTATC-TCCCAGATGGAGCA 804 || ||| ||||||||||||||||||||||||||||| ||||| | | ||||||||| Sbjct 527 TCGACAATAGTGAGATATTACCATTTCGTAAAATCTCCTTTTA-CATT---GATGGAGCA 582 Query 805 AGATTTGGCAATAACATTGCTGTTACAATATCAGGAGAGGTTTTGTTGGTTCAGAACTTC 864 |||||| | ||||||||||| ||||||| |||| |||||||||||||||||||||||||| Sbjct 583 AGATTTAGTAATAACATTGCCGTTACAACATCAAGAGAGGTTTTGTTGGTTCAGAACTTC 642 Query 865 TTTTACGAGGCAACAAGATATAGGAGCTTCCGTCTGTACAAGAAAGATCCTAATCCAGAT 924 ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 643 TTTTACGAGACAACAAGATATAGGAGCTTCCGTTTGTACAAGAAAGATCCTAATCCGGAC 702 Query 925 TTGAATACTATTATCAACAACCCGTACCCGATGGTTGAGGTATATTCTCTAGGTGATGAG 984 |||||| ||| |||||||||||| ||||||||||||||| ||| |||||||||||||| Sbjct 703 TTGAATGCTACTATCAACAACCCCTACCCGATGGTTGAGTTATGTTCTCTAGGTGATGT- 761 Query 985 GCTCTGCTTCTAGATTTGG 1003 |||||||||| ||||||| Sbjct 762 -CTCTGCTTCTGGATTTGG 779 Score = 255 bits (138), Expect = 6e-67 Identities = 195/222 (88%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 208 GGTGGTTGTGCTATGTACAACCCGGATGAAGC--AAGAATTTACAGAACGAAGAGAGGCT 265 |||||||||||||| ||||||||||| ||||| ||| | ||||| ||| || |||| || Sbjct 73 GGTGGTTGTGCTATATACAACCCGGACGAAGCTAAAG-A-TTACAAAACAAAAAGAGACT 130 Query 266 TTTCCGGGATTCGATTCTTGGCAAACTCAGGTAACTGGTTCTTAGTTCTAGATTCTAAG- 324 || ||||||||||||||||||||||||| |||||||||||| || ||||||||| | Sbjct 131 CCTCAGGGATTCGATTCTTGGCAAACTCAGTTAACTGGTTCTTGGTGCTAGATTCT-CGT 189 Query 325 TCCAATATCTATATCATAGATTTGTTTAGCGAGAAAAAGATCGATCTTCCACCTCTAGAG 384 |||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 190 TCCAATCTCTATATCATAGATGTGTTTAGCGAGAAAAAGATCGATCTTCCACCCCTAGAA 249 Query 385 TCAATGAAGGGTGGCCTTTTTAGTCTTGAGCAAGTAGGAGAC 426 ||||| ||| |||||||| |||||||||||||||||||||| Sbjct 250 TCAATCAAGAATGGCCTTTATAGTCTTGAGCAAGTAGGAGAC 291 Score = 130 bits (70), Expect = 4e-29 Identities = 90/100 (90%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1091 GGAAACATTCATGTCTGGACATCTGTGTGTTCAATCTTGCAACAAAGAAACTCAAACGCT 1150 |||||| ||| ||||||||||| ||| |||||||||||| ||||||||||| ||||| | Sbjct 785 GGAAACGTTCTTGTCTGGACATGTGTATGTTCAATCTTGTGACAAAGAAACTTAAACGAT 844 Query 1151 TCCCGGGTCTCTCCAACTTAAAGCTCACGGATGCTCGATG 1190 |||||| ||| ||||||||||||||||||||||||||||| Sbjct 845 TCCCGGATCTTTCCAACTTAAAGCTCACGGATGCTCGATG 884 > AT5G25290.1 | Symbols: | F-box family protein with a domain of unknown function (DUF295) | chr5:8778592-8779785 FORWARD LENGTH=1194 Length=1194 Score = 440 bits (238), Expect = 2e-122 Identities = 565/715 (79%), Gaps = 54/715 (8%) Strand=Plus/Plus Query 45 CTGGTCGGAGCTCCCTATAGACATCTTGAGATCTGTGTTCGAACGTTTCAGTTTTGTGGA 104 |||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||| || Sbjct 39 CTGGTCGGAGATTCCTATGGACATCTTGAGATCAGTGTTCGAACGTTTGAGTTTTGTCGA 98 Query 105 TTTTCACCGCGCTAAGATCGTGTGTTCGAATTGGTATTCGTGTTCCAAACAATCGTTGCT 164 | | |||||||||||||||||||||||| |||||||||| ||||| ||||||||||| || Sbjct 99 TCTCCACCGCGCTAAGATCGTGTGTTCGCATTGGTATTCATGTTCGAAACAATCGTTTCT 158 Query 165 ACGAAAAACCGGATCT-CCGTGGTTGATTCTGTTTTTAAACGATGGTGGTTGTGCTATGT 223 ||||||||| ||||| || ||| |||||||||||| | | ||||||| |||| || ||| Sbjct 159 CCGAAAAACCAGATCTCCCTTGG-TGATTCTGTTTTCAGATGATGGTGATTGTACTTTGT 217 Query 224 ACAACCCGGATGAAGCAAGAATTTACAGAACG-AAGAGAGGCTTTTC-CGGGATTCGATT 281 | ||||| || ||||| || |||||| || | ||||||| ||| || || | |||||| Sbjct 218 ATAACCCTGAGGAAGCTAGGGTTTACA-AAAGTAAGAGAGACTTATCAAGGTA-TCGATT 275 Query 282 CTTGGCAAACTCAGGTAACTGGTTCTTAGTTCTAGATTCTA-AGTCCAATATCTATATCA 340 | | ||||||||||||||||||||||||||||| ||| ||| | |||||| ||||||||| Sbjct 276 CCTAGCAAACTCAGGTAACTGGTTCTTAGTTCTTGATCCTAGA-TCCAATCTCTATATCA 334 Query 341 TAGATTTGTTTAGCGAGAAAAAGATCGATCTTCCACCTCTAGAGTCAATGAAGGGTGGCC 400 ||||||||||||||||||| |||||| |||||||||||||||| ||| | || ||| | Sbjct 335 TAGATTTGTTTAGCGAGAAGAAGATCAATCTTCCACCTCTAGATTCATTCAAAGGTTACA 394 Query 401 TTTTTAGTCTTGAGCAAGTAGGAGAC-ACGGCA-TTCAAGGCG--AG-ATTA-AATAATG 454 | || |||| || |||| |||| | | | | ||||||| | || || |||| | Sbjct 395 AATATAATCTTAAGAAAGTTGGAG-CTA-GAAAATTCAAGGAGCTAGTATCCGAATA-TC 451 Query 455 GTAGTGCATATTC-ATTCCATAATGCGGAAG-ATCTGAGAGGTCTTTTGTGGGTAGACGA 512 | | | | ||| | |||| ||||| ||| |||||||||||||||||||||||||||| Sbjct 452 CCACTTC-T-TTCCA--CCATCATGCG-AAGGATCTGAGAGGTCTTTTGTGGGTAGACGA 506 Query 513 GAAGAA-GAAAGAATTCGTTGTTGTGTGGTTTTTC-G-A-CAAAGG-TACCGA---ATA- 563 |||||| ||| || | ||||||||| |||| ||| | | ||| | ||| || || Sbjct 507 GAAGAAAGAA-GAGTACGTTGTTGTATGGTACTTCCGTAACAA-GTATAC-GATGGATTC 563 Query 564 TTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGCGACATTCCGATACGAAAAAATGT 623 |||||||||||||||||||||||||||||||||||| || || || | || | | ||| Sbjct 564 TTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGTGAGATGCC-A-AC-ACACTATG- 619 Query 624 TGGTAAAGAGTTACAAGGCTTATATGATATGGTACTTTATGGTGGTGAC-AGTCTTTACA 682 ||| | | | ||| | || |||||||||||| | |||||||| | | ||||| Sbjct 620 -GGTTAC-A-TGACA----T-ATCTGATATGGTACTACAACGTGGTGACCA-TATTTACC 670 Query 683 TCTCAACCACTCGTCAAT-CGATTCAAAAGCTTAACTTTTT-TGGACAAGAAGGT 735 ||||||| | | || ||| | ||||||| ||| | ||| | | ||||||||||| Sbjct 671 TCTCAACGAGTTGTAAATACC-TTCAAAAACTTGA-TTTGTCTAGACAAGAAGGT 723 > AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6648909 REVERSE LENGTH=822 Length=822 Score = 134 bits (72), Expect = 3e-30 Identities = 273/364 (75%), Gaps = 37/364 (10%) Strand=Plus/Plus Query 205 GATGGTGGTTGTGCTATGTACAACCCGGATGAAG--CA-AGAATTTACAGA-ACGAAGAG 260 |||||| | ||||||| ||||| || || |||| | ||| |||||| | || ||||| Sbjct 16 GATGGTTG-TGTGCTA--TACAATCCAGAAGAAGATAATAGAGTTTACA-ATACAAAGAG 71 Query 261 AGGCTTTTCCGGGATTCGATTCTTGGCAAACTCAGGTAACTGGTT-CTTAGTTCTAGAT- 318 || |||||| || ||| ||| | |||||||||||||||| ||| || | ||||| Sbjct 72 AGACTTTTCAAAGACTCGTTTCCTAGCAAACTCAGGTAACTTGTTCCTCA-CGGTAGATG 130 Query 319 TCT-AAGTCCAATATCTATATCATAGATTTGTTTAGCGAGAAAAAGA-TCGATCTTCCAC 376 | | || |||||| |||||||||||||||||||||||||||| | || || |||| |||| Sbjct 131 T-TGAA-TCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGA-GAATCAATCTCCCAC 187 Query 377 CTCTAGAGTCAATG-AAGGGTGGCCTTTTTAGTCTTGAGC-AAGTAGGAGACACGGCATT 434 || |||| ||| || |||| |||||||| |||| ||| || ||||||| | || ||| Sbjct 188 CTTTAGACTCAGTGGAAGG----CCTTTTTACTCTTAAGCGAA-TAGGAGATAAGG-ATT 241 Query 435 -C-AAGGCGAGATTAAATA-ATGGTAG-T--GCATATTCATTCCATAATGCGGA-AGATC 487 | ||| || ||| | || | ||| | | || | ||| |||| || | || Sbjct 242 TCGAAGA-GAAATTTACTAGACC-TAGCTTTGGTTACAGAAACCAGAATGTGGTTA-ATT 298 Query 488 TGAGAGGTCTTTTGTGGGTAGACGAGAAGAAGAAAGAAT--T-CGTTGTTGTGTGGTTTT 544 |||||||||||||||||||||| ||| |||| |||||| | | |||||||||||||| Sbjct 299 TGAGAGGTCTTTTGTGGGTAGATGAGGAGAATAAAGAAGAATACACTGTTGTGTGGTTTT 358 Query 545 TCGA 548 |||| Sbjct 359 TCGA 362 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70330963545 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5