BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg942094 Length=432 Score E Sequences producing significant alignments: (Bits) Value AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 305 2e-82 > AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast hits to 224 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093 FORWARD LENGTH=1434 Length=1434 Score = 305 bits (165), Expect = 2e-82 Identities = 264/307 (86%), Gaps = 25/307 (8%) Strand=Plus/Plus Query 48 CAACTGCTC-AGAGTGAATTTCTAGATATGAATGAGGAAGATTGTCAAATTGAGATCAAT 106 ||| ||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||| Sbjct 1016 CAA-TGCTCAAGAGTGAATTTGTAGATATGAATAAGGAAGATTCTCAAATTGAGATCAAT 1074 Query 107 GAGAAAGAAACAAAAAT---TCAAGAACATGATCAAAGTGATGAATCTCAAGCTAAACGT 163 |||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1075 GAGAAAGAGACAAAAATCAACCAAGAACATGATCAAAGTGATGAAACTCAAGCTAAACGT 1134 Query 164 AAGAGACGCCGCCTAACTTCTTCTGTAT--C---A-C---TA-C-GT----GGAGAAGCA 208 || || | | |||||||||||||| | | | | || | || ||||||||| Sbjct 1135 -AG-GA-GAAGTCTAACTTCTTCTGTTTGGCAAGATCTTGTATCAGTAGGGGGAGAAGCA 1191 Query 209 AATGTCAAAGAAACAGATAAAAGCATGGAGACTCCAAATTCTAG-CCCCTGCTGGTCGGA 267 ||||| ||||||| ||||| ||||||||||||||| |||||||| |||| ||||||||| Sbjct 1192 AATGTTAAAGAAATAGATAGAAGCATGGAGACTCCTAATTCTAGTCCCC-CCTGGTCGGA 1250 Query 268 GCTCCCTGGTGACATATTAAGATCTGTGTTTAAACGTTTGAGTTTTGTTGACTTCCAGCG 327 |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1251 GCTCCCTGGTGACATATTAAGATCTGTGTTCGAACGTTTGAGTTTTGTTGATTTCCAGCG 1310 Query 328 CGCTAAG 334 ||||||| Sbjct 1311 CGCTAAG 1317 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20509241592 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5