BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942094

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25300.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box dom...   305    2e-82


> AT5G25300.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: F-box domain, 
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana 
protein match is: F-box family protein with a domain 
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast 
hits to 224 proteins in 5 species: Archae - 0; Bacteria - 
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other 
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093 
FORWARD LENGTH=1434
Length=1434

 Score =  305 bits (165),  Expect = 2e-82
 Identities = 264/307 (86%), Gaps = 25/307 (8%)
 Strand=Plus/Plus

Query  48    CAACTGCTC-AGAGTGAATTTCTAGATATGAATGAGGAAGATTGTCAAATTGAGATCAAT  106
             ||| ||||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct  1016  CAA-TGCTCAAGAGTGAATTTGTAGATATGAATAAGGAAGATTCTCAAATTGAGATCAAT  1074

Query  107   GAGAAAGAAACAAAAAT---TCAAGAACATGATCAAAGTGATGAATCTCAAGCTAAACGT  163
             |||||||| ||||||||    |||||||||||||||||||||||| ||||||||||||||
Sbjct  1075  GAGAAAGAGACAAAAATCAACCAAGAACATGATCAAAGTGATGAAACTCAAGCTAAACGT  1134

Query  164   AAGAGACGCCGCCTAACTTCTTCTGTAT--C---A-C---TA-C-GT----GGAGAAGCA  208
              || || |  | |||||||||||||| |  |   | |   || | ||    |||||||||
Sbjct  1135  -AG-GA-GAAGTCTAACTTCTTCTGTTTGGCAAGATCTTGTATCAGTAGGGGGAGAAGCA  1191

Query  209   AATGTCAAAGAAACAGATAAAAGCATGGAGACTCCAAATTCTAG-CCCCTGCTGGTCGGA  267
             ||||| ||||||| ||||| ||||||||||||||| |||||||| ||||  |||||||||
Sbjct  1192  AATGTTAAAGAAATAGATAGAAGCATGGAGACTCCTAATTCTAGTCCCC-CCTGGTCGGA  1250

Query  268   GCTCCCTGGTGACATATTAAGATCTGTGTTTAAACGTTTGAGTTTTGTTGACTTCCAGCG  327
             ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||
Sbjct  1251  GCTCCCTGGTGACATATTAAGATCTGTGTTCGAACGTTTGAGTTTTGTTGATTTCCAGCG  1310

Query  328   CGCTAAG  334
             |||||||
Sbjct  1311  CGCTAAG  1317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5