BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942105
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25290.1 | Symbols: | F-box family protein with a domain of... 1037 0.0
AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 102 7e-21
AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6... 80.5 3e-14
> AT5G25290.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr5:8778592-8779785 FORWARD
LENGTH=1194
Length=1194
Score = 1037 bits (561), Expect = 0.0
Identities = 1008/1211 (83%), Gaps = 82/1211 (7%)
Strand=Plus/Plus
Query 15 GGAAGCATGGTGACTCTCTGGTCGGAGATCCCTATGGACATCTTGAGATCTGTGTTCGAA 74
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 22 GGAAGCATGGTGACTCTCTGGTCGGAGATTCCTATGGACATCTTGAGATCAGTGTTCGAA 81
Query 75 CGTTTGAGTTTTGTGGATTTCCACCGCGCTAAGATCGTGTGTTCGAATTGGTATTCGTGT 134
|||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 82 CGTTTGAGTTTTGTCGATCTCCACCGCGCTAAGATCGTGTGTTCGCATTGGTATTCATGT 141
Query 135 TCGAAACAAAC-TTTGCCTC-GAAAAAACACATCTCCAT-GGCTGATTCTCTTTCCAGAG 191
||||||||| | ||| | || |||||| || |||||| | || ||||||| ||| ||||
Sbjct 142 TCGAAACAATCGTTT-C-TCCGAAAAACCAGATCTCCCTTGG-TGATTCTGTTTTCAGAT 198
Query 192 GAGGATGGTAATTGTGCTTTGTATAACCCGGAGGAAGCTAGGGTTTACAAAACCAAGAGA 251
|| |||| ||||| ||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 199 GA---TGGTGATTGTACTTTGTATAACCCTGAGGAAGCTAGGGTTTACAAAAGTAAGAGA 255
Query 252 GACTTATCAAGATTTCGATTCTTGGCAAACTCAGGTAAATGGTTCTTAGTTCTAGATTCT 311
||||||||||| | ||||||| | |||||||||||||| |||||||||||||| ||| ||
Sbjct 256 GACTTATCAAGGTATCGATTCCTAGCAAACTCAGGTAACTGGTTCTTAGTTCTTGATCCT 315
Query 312 AAATTCAATCTTTATATCATAGATTTGTTTAGCGAGAAAAATATCGATCTTCCACCTCTA 371
| || |||||| |||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 316 AGATCCAATCTCTATATCATAGATTTGTTTAGCGAGAAGAAGATCAATCTTCCACCTCTA 375
Query 372 GAGTCATTCAAAGGTAACAAGTATAATCTTAAGAGAGTCGGAGATAAAAAGAT-CAAAGA 430
|| |||||||||||| |||| ||||||||||||| ||| |||| || ||| || ||| ||
Sbjct 376 GATTCATTCAAAGGTTACAAATATAATCTTAAGAAAGTTGGAGCTAGAAA-ATTCAAGGA 434
Query 431 GGTAAGATTAGAAATCGGA-TATACCTCTT-TTGTC-ATCC-TAAAAGCGAAATATCTGA 486
| || | | | || || ||| || ||| || || | || | | ||||| ||||||
Sbjct 435 GCTA-G-T-A----TCCGAATATCCCACTTCTT-TCCA-CCATCAT-GCGAAGGATCTGA 484
Query 487 GAGGTCTTTTGTGGGTAGACGAGAAGAAGGAAGAGTACGTTGTTGTTTGGTACTTCAGTG 546
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 485 GAGGTCTTTTGTGGGTAGACGAGAAGAAAGAAGAGTACGTTGTTGTATGGTACTTCCGTA 544
Query 547 ACAAGTATAAGATTGATTATTCAGCCTTTTGCAAGAATGGGGAAGATCATTACCATGAGA 606
||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| |||||
Sbjct 545 ACAAGTATACGATGGATTCTTTAGCCTTTTGCAAGAACGGGGAAGATCATTACCGTGAGA 604
Query 607 TTCCAACATACTTTGG----CAT-A--T--CTGATATGGTACTTACATCTTATGGTGAC- 656
| |||||| ||| ||| ||| | | ||||||||||||| ||| | | ||||||
Sbjct 605 TGCCAACACACTATGGGTTACATGACATATCTGATATGGTACT-ACAACGT--GGTGACC 661
Query 657 AGTCTTTACATCTTAAAC-ACTAGTGATTACATTGAAAAACTTGATTTGTCTGGACAAGA 715
| | ||||| ||| || | | | || | ||| || ||||||||||||||||| |||||||
Sbjct 662 A-TATTTACCTCTCAA-CGAGTTGTAAATACCTTCAAAAACTTGATTTGTCTAGACAAGA 719
Query 716 AGGTTTCAAGGATGTGTCCAAGAATGAGGCTATATTTTTACGATTTCGTTTGCCAGGTCT 775
|||| | ||||| |||||||||| | |||| | | ||| | || |||||| |||
Sbjct 720 AGGTAT-AAGGA-----CCAAGAATGATGATATAATATCACGCTATCAATTGCCATGTCG 773
Query 776 TCCAAGGGATTTTAAATTCACATATGATGCAAAG-G--G-T--AGCAATAGCATTGCTGT 829
||| | | ||| |||||| ||||||||||||| | | | ||| ||| |||||||||
Sbjct 774 TCCGACGAATTATAAATTGGTATATGATGCAAAGTGTTGGTGTAGCTATAACATTGCTGT 833
Query 830 TACATCATCAGGAGAAGTTTTGTTAGTCATGAACATCTTTTC-CGAGTCAACAAGGCGTA 888
|||||||||||||||||||||||| ||| ||| ||||||||| | |||||||||||||||
Sbjct 834 TACATCATCAGGAGAAGTTTTGTTTGTCTTGAGCATCTTTTCGC-AGTCAACAAGGCGTA 892
Query 889 GGATCTTCTTTCTCTACAAGGA---TCCGGGT--------G-G-GAGC--ATTTACAACA 933
||||||||||||| |||||||| ||| | | | ||| |||||||| |
Sbjct 893 GGATCTTCTTTCTATACAAGGAGGATCCTAATCCATCCCCGAGTGAGGTTATTTACAAGA 952
Query 934 AGCTTGTTGAGGTAGATTCTTTAGGTA-ATGAGGCCCTGCTTCTGGATTTGGGTATAACC 992
| ||||||||||||||||| ||||| | | ||||| || ||||||||||||||||| |||
Sbjct 953 ATCTTGTTGAGGTAGATTCGTTAGG-AGACGAGGCGCTTCTTCTGGATTTGGGTATCACC 1011
Query 993 GTTCCTGCTGATGGTGACCTTGGTATCGAACCAAACTCTATCTATTTCACTCGTCATGAT 1052
|| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1012 GTGCCTGCTGATAGTGACCTTGGTATAGAACCAAACTCTATCTATTTCACTCGCCATGAT 1071
Query 1053 CGTGTCCGTTA-CCAGAAACGTTCATGC-CCGGACATCTGTGTGTTCAATCTTGAAACAA 1110
|| || | || |||||||||||||| | || |||||||||||||||||| ||| |||||
Sbjct 1072 CGAGTA-GCTAACCAGAAACGTTCAT-CTCCTGACATCTGTGTGTTCAATATTGTAACAA 1129
Query 1111 AGACCCTCAGACGTTTCCCCGGTCTCTCCAACTTAAAGCTCACGGATGCTCGATGGTTTC 1170
||||||||| ||||||||| |||||||||| ||||||| | |||||||||||||||
Sbjct 1130 AGACCCTCAAACGTTTCCCAGGTCTCTCCAGCTTAAAG-----G-ATGCTCGATGGTTTC 1183
Query 1171 TCCCGTCTTGA 1181
|||||||||||
Sbjct 1184 TCCCGTCTTGA 1194
> AT5G25300.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana
protein match is: F-box family protein with a domain
of unknown function (DUF295) (TAIR:AT5G25290.1); Has 285 Blast
hits to 224 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink). | chr5:8780258-8783093
FORWARD LENGTH=1434
Length=1434
Score = 102 bits (55), Expect = 7e-21
Identities = 88/104 (85%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 1063 ACCAGAAACGTTCATGCCCGGACATCTGTGTGTTCAATCTTGAAACAAAGACCCTCAGAC 1122
||| ||||||||| || | |||||| ||| |||||||||||| ||||||| || | ||
Sbjct 782 ACCGGAAACGTTCTTGTCTGGACATGTGTATGTTCAATCTTGTGACAAAGAAACTTAAAC 841
Query 1123 GTTTCCCCGG-TCTCTCCAACTTAAAGCTCACGGATGCTCGATG 1165
| || ||||| ||| |||||||||||||||||||||||||||||
Sbjct 842 GATT-CCCGGATCTTTCCAACTTAAAGCTCACGGATGCTCGATG 884
Score = 97.1 bits (52), Expect = 3e-19
Identities = 69/77 (90%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 32 CTGGTCGGAGATCCCTATG-GACATCTTGAGATCTGTGTTCGAACGTTTGAGTTTTGTGG 90
|||||||||| ||||| | ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1242 CTGGTCGGAGCTCCCT-GGTGACATATTAAGATCTGTGTTCGAACGTTTGAGTTTTGTTG 1300
Query 91 ATTTCCACCGCGCTAAG 107
||||||| |||||||||
Sbjct 1301 ATTTCCAGCGCGCTAAG 1317
> AT4G10820.1 | Symbols: | F-box family protein | chr4:6648009-6648909
REVERSE LENGTH=822
Length=822
Score = 80.5 bits (43), Expect = 3e-14
Identities = 167/223 (75%), Gaps = 23/223 (10%)
Strand=Plus/Plus
Query 938 TGTTGAGGTAGATTCTTTAGGTAATGAGGCCCTGC-TTCTGGATTTGGGTATAACCGTTC 996
|||||||||| |||||||||| |||||||| | | || ||||||| ||||| | || |
Sbjct 609 TGTTGAGGTATATTCTTTAGGCGATGAGGCCTTTCGTT-TGGATTTAGGTATCATTGTGC 667
Query 997 CTGCTGATGGTGACCTTGGTATCGAACCAAACTCTATCTATTTCACTCGTCATGATCGTG 1056
||||||| | ||||||||||| ||| | ||||||||||| ||| | || ||||
Sbjct 668 CTGCTGACCATCCCCTTGGTATCG-----AAC-C-ATCTATTTCACCCGTTACGACCGTG 720
Query 1057 TCCGTTAC-CAG-AAACG----TTCATG-C----CCG-GACATCTGTGTGTTCAATCTTG 1104
|| | || | ||| | |||||| | ||| |||||||||||||||||||||
Sbjct 721 TCTATAACTGTGAAAAGGATTTTTCATGTCGGGTCCGACACATCTGTGTGTTCAATCTTG 780
Query 1105 AAACAAAGACCCTCAGACGTTTCCCCGGTCTCTC-CAACTTAA 1146
||||||||| ||| ||| ||||| ||||||| || |||||
Sbjct 781 AAACAAAGAAAATCACACGCTTCCCAAGTCTCTCGCA-CTTAA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59136242010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5