BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942110

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25415.1 | Symbols:  | Protein of Unknown Function (DUF239) ...   438    2e-122


> AT5G25415.1 | Symbols:  | Protein of Unknown Function (DUF239) 
| chr5:8834206-8837248 FORWARD LENGTH=1118
Length=1118

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 279/300 (93%), Gaps = 0/300 (0%)
 Strand=Plus/Plus

Query  73   TAAGTGAAAATGCTACATACGATTGTGTAGATATTTTTAAGCAACCAGGACTTAATCATC  132
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  220  TAAGTGAAAATGCTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATC  279

Query  133  CCTTGCTCCAAAACAACACAATCCAGATTGCTGGAGTAAGGTCACAAGCTGGTCCATTTT  192
            ||| ||| |||||| ||||||||||||||||||||||||||||||  |||||||||| | 
Sbjct  280  CCTCGCTTCAAAACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATC  339

Query  193  ATGGTGTAGAAGCTTGGTATGATGGATTTGCGCTAAACGTTGGACGATATCAGATTTCAT  252
            |||||||||||||||||| | |||||| |  |||||||||||||||||| ||||||||||
Sbjct  340  ATGGTGTAGAAGCTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCAT  399

Query  253  ATAGCCAAATATTTATAGGCAGTCTATTGAATAACCAAGAAAATTTTATCCAAGCGGGTT  312
            ||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||
Sbjct  400  ATACCCAAATATTTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTT  459

Query  313  ATATTATAAATCCAGGTTTCTTTCGCACCGGACAACTTTGGACGTATGCATTTTGGAAGG  372
            ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  460  ATATTATTAATCCAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGG  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19101744620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5