BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942118
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25460.1 | Symbols: | Protein of unknown function, DUF642 |... 1796 0.0
> AT5G25460.1 | Symbols: | Protein of unknown function, DUF642
| chr5:8863363-8865677 FORWARD LENGTH=1460
Length=1460
Score = 1796 bits (972), Expect = 0.0
Identities = 1093/1153 (95%), Gaps = 2/1153 (0%)
Strand=Plus/Plus
Query 1 TCTCTTTCTCTCTTCCGTCAAAATGGGGGGCGTCACCGTCGTGTCCTTCTTCCTTCTTTT 60
|||| |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 46 TCTCGTTCTCTCTTCCGTCAATATGGAAGGCGTCACCGTCGTGTCTTTCTTCCTTCTTTT 105
Query 61 CATCGCCACCGCAACCGCCGCTAAGTCCACCGTCTCGTTCCGTGACGGCATGTTACCAAA 120
|||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 106 CATCGCCACCGCCATGGCCGCCAAGTCCACCGTCTCCTTCCGTGACGGCATGTTACCAAA 165
Query 121 CGGAGACTTCGAGCTAGGACCAAAACCATCAGACATGAAAGGAACAGAAATACTAAACAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CGGAGACTTCGAGCTAGGACCAAAACCATCAGACATGAAAGGAACAGAAATACTAAACAA 225
Query 181 ACTAGCAATACCAAACTGGGAAGTCACAGGATTCGTCGAGTACATTAAATCAGGACATAA 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 226 ACTAGCAATACCAAACTGGGAAGTCACAGGATTCGTCGAATACATTAAATCAGGACATAA 285
Query 241 ACAAGGAGACATGCTGCTCGTTGTTCCGGCCGGTAAATTCGCAGTCCGGCTAGGAAACGA 300
||||||||||||||| ||||||||||| |||||||||||||| || | || || |||||
Sbjct 286 ACAAGGAGACATGCTTCTCGTTGTTCCCGCCGGTAAATTCGCTGTAAGACTTGGGAACGA 345
Query 301 AGCATCGATCAAACAAAGACTTAAAGTGGTTAAAGGAATGTATTACTCGCTCACTTTTAG 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 AGCATCGATCAAACAAAGACTTAAAGTGGTTAAAGGAATGTATTACTCACTCACTTTTAG 405
Query 361 TGCTGCTAGGACTTGTGCTCAAGACGAGAGACTTAACATATCTGTAGCACCTAACTCCGG 420
||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 406 TGCTGCTAGAACTTGTGCACAAGACGAGAGACTTAACATATCTGTAGCACCTGACTCCGG 465
Query 421 TGTGATTCCGGTTCAGACGGTTTATAGTAGTAGTGGGTGGGATTTGTATGCTTGGGCGTT 480
|||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 466 TGTGATTCCGATTCAGACGGTTTATAGTAGTAGTGGTTGGGATTTATATGCTTGGGCGTT 525
Query 481 TCAAGCTGAGAGTGAAGTTGCTGAAGTTGTGATTCATAATCCTGGTGTTGAAGAAGATCC 540
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 526 TCAAGCTGAGAGTGATGTTGCTGAAGTTGTGATTCATAATCCTGGTGTTGAGGAAGATCC 585
Query 541 AGCTTGTGGTCCACTTATTGATGGTGTTGCTATGAGATCTCTTTACCCTCCTCGACCAAC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 586 AGCTTGTGGTCCACTTATTGATGGTGTTGCTATGAGATCTCTTTACCCTCCTAGACCAAC 645
Query 601 TAATAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCATTAGTACTACCGGGCGC 660
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 646 TAATAAGAACATTTTGAAAAACGGAGGATTTGAAGAAGGTCCATTAGTATTACCCGGCTC 705
Query 661 GACAACGGGAGTTTTGATTCCACCGTTCATAGAAGATGACCACTCTCCTTTACCTGGCTG 720
|||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 706 GACAACTGGAGTTTTGATCCCACCGTTTATAGAAGACGACCACTCTCCTTTACCTGGATG 765
Query 721 GATGGTGGAGTCTCTCAAAGCTGTCAAGTACGTAGACATTGAGCATTTCTCAGTCCCACA 780
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 766 GATGGTGGAGTCTCTCAAAGCTGTCAAGTACGTAGACGTTGAACATTTCTCAGTCCCACA 825
Query 781 GGGTCGCCGAGCTATTGAGCTTGTAGCGGGTAAAGAGAGCGCCATCGCTCAAGTGGTTCG 840
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 826 GGGTCGCAGAGCTATTGAGCTTGTAGCGGGTAAAGAGAGTGCCATCGCTCAAGTGGTTCG 885
Query 841 TACCATCATTGGGAAAACTTACGTGCTTTCTTTTGCGGTTGGAGATGCCAACAACGCTTG 900
|| |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 886 GACTGTCATTGGGAAGACTTACGTGCTGTCTTTTGCGGTTGGAGACGCCAACAATGCTTG 945
Query 901 CAAAGGATCAATGGTGGTTGAGGCTTTTGCGGGAAAAGAGACACTTAAGGTCCCTTACGA 960
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 946 CAAAGGATCAATGGTGGTTGAGGCTTTTGCAGGAAAAGATACACTTAAGGTCCCTTACGA 1005
Query 961 GTC-ACAAGGCACCGGAGGGTTTAAACGAGCTTCTATCCGGTTTGTGGCGGTTTCGAGCC 1019
||| | ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 1006 GTCGA-AAGGCACAGGAGGGTTTAAACGAGCTTCTATTCGATTTGTGGCGGTTTCGACCC 1064
Query 1020 GATCAAGAATTATGTTCTACAGCACTTTCTATGCCATGAGAAGCGATGATTTCTCGTCAT 1079
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1065 GATCAAGAATTATGTTCTACAGCACTTTCTATGCCATGAGGAGCGATGATTTCTCGTCAT 1124
Query 1080 TGTGCGGGCCTGTGATCGACGATGTCAAGCTTATAAGCGTTCGTAAACCATAGATGAATC 1139
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TGTGTGGGCCTGTGATCGATGATGTCAAGCTTATAAGCGTTCGTAAACCATAGATGAATC 1184
Query 1140 ACAAATCCTATTA 1152
|| ||||||||||
Sbjct 1185 ACCAATCCTATTA 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5