BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942123
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25500.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1960 0.0
> AT5G25500.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:8880863-8882542
FORWARD LENGTH=1680
Length=1680
Score = 1960 bits (1061), Expect = 0.0
Identities = 1222/1301 (94%), Gaps = 6/1301 (0%)
Strand=Plus/Plus
Query 3 CACTTAGCTGCTTTTCAAATGTGGGTTAATGGGTATCATCAAATAAGAAGACTTCTAATC 62
|||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 238 CACTAAGCTGATTTTCAAATGTGGGTTAATGGGTATCATCAAATAAGAATACATCTAAAC 297
Query 63 TCTG-ACATCTGTTTC-AGAGCAAATCCGAGTCGCTTCTTCCAATCAATCCAGGTTTTGT 120
|||| || || ||||| || |||||||| ||||||||||||| ||| ||||||||||||
Sbjct 298 TCTGAAC-TCAGTTTCAAG-GCAAATCCAAGTCGCTTCTTCCGTTCATTCCAGGTTTTGT 355
Query 121 ATCATTCTTCAGTTGATTCCTTTGAAGATACATTGCCTTGTGAATGGTACGAGTCGAAAC 180
||||| ||||||||||||| | ||||||| ||||||| |||||||||||| ||||||
Sbjct 356 ATCATCCTTCAGTTGATTCATATGAAGATGTATTGCCTCATGAATGGTACGAAACGAAAC 415
Query 181 TCACAGTTCTGAAAAAACTAAGCCGTGCATTGAAAGATGTCGATTTAGTCGATGGGAAGC 240
|| |||||||||| ||||||| |||||| |||| |||||| ||||||||||| || ||||
Sbjct 416 TCCCAGTTCTGAAGAAACTAAACCGTGCGTTGAGAGATGTTGATTTAGTCGACGGAAAGC 475
Query 241 TAGAGGACATCAATGGTGTCATCATTTATGATGATGGTATCAAAAAGAAAATGCAAGCCT 300
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 476 TAGAGGACATCAATGGTGTCATCGTTTATGATGATGGTATCACAAAGAAAATGCAAGCAT 535
Query 301 TTAAGTCTCTGGCTAGAATGTTTGTTGGTTCTCCTTCAATTCAGAAGAAGCTCAGAGAAG 360
|||| ||||| |||||||| ||| |||| ||||||||||||||| ||||||| |||||||
Sbjct 536 TTAAATCTCTAGCTAGAATCTTTATTGGGTCTCCTTCAATTCAGCAGAAGCTTAGAGAAG 595
Query 361 AGGGAAGGTTCAAGTTCCCATTTTTTGGGAGTGAAAGTGAAAGAGAGCCATTGGTGGTGA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGGGACGGTTCAAGTTCCCATTTTTTGGGAGTGAAAGTGAAAGAGAGCCATTGGTGGTGA 655
Query 421 ATTCATTGACTAAAGTTAGCAACTTTCTTAATGTCTCGGCGCAACAGCGGAAGCTAGTGA 480
||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||
Sbjct 656 ATTCATTGACTAAAGTTTGCAACTTTCTCAACGTCTCGGCGCAACAGAGGAAGCTAGTGA 715
Query 481 GGTGCACTGTGTGTTCACAGGTAACGCAGTATCGTATATGGAGAGGTGCTCTTGAAGATA 540
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 GGAGCACTGTGTGTTCACAGGTAACGCAGTATCGTATATGGAGAGGTACTCTTGAAGATA 775
Query 541 TATTGAATGGTCTTAAAGATGAAGTTGATTGGTTAGTTGAACATAGAGAGGTGAGTCAAG 600
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 776 TATTGAATGGTCTTAAAGAAGAAGTTGATTGGTTAGTTGAACATAGAGAGATGAGTCAAG 835
Query 601 GTAGAGTATTGGCTCAGCAAGTGATATTGTCTTGCCTCAGATTCTTATCTGAATCATCGG 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 836 GTAGAGTATTGGCTCAGCAAGTGATATTGTCTTGCCTCAGATTCTTATCTGAATCATCAG 895
Query 661 TTTCATTTGAAGCCGAGAAATCAACTTCTTGGATGCGGCCTGTGCCAGCTAGATATGCGA 720
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTTCATTTGAAGTCGAGAAATCAACTTCTTGGATGCGGCCTGTGCCAGCTAGATATGCGA 955
Query 721 AAGCTAATGCTTCTGCGAAATGGGAAGATGTTCTTGATATGGTGAATGATCTAAGAAGGT 780
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 956 AAGCTAATGCTTCTGCGAAATGGGAAGATGTACTTGATATGGTGAATGATCTGAGAAGGT 1015
Query 781 ATCTTGAACATGATGAAGAAATTACTGTACTTTATCATTTGGAAAAGCTTGTATCGATGA 840
|||||||||||||||||||||| || |||||||| ||| |||| ||||||||||||||||
Sbjct 1016 ATCTTGAACATGATGAAGAAATCACAGTACTTTACCATCTGGATAAGCTTGTATCGATGA 1075
Query 841 AAGAAGGGCTTTTGCAGATCAAAGATGTGTTTTTGGACAACACTATTGGATTTAGAGAGG 900
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1076 AAGAAGGGCTTTTGCAGATCAAAGATGTGTTTTTAGACAACACTATTGGATTCAGAGAGG 1135
Query 901 TTAGACATCAAGAGCACCTTGTGTACAGAAAACTCTCAAAGATGTTGGGCAGTCCTTCGC 960
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |
Sbjct 1136 TTAGACATCAAGAGCACCTTGTGTACAGAAAGCTCTCAAAGCTGTTGGGCAGTCCATCAC 1195
Query 961 CTTGTTTGTTCT-CTCTCGTCATGTATTTCCTCTATGGCCGTGTGCGTGATATTGAAGTT 1019
| |||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1196 CGTGTTTGTT-TGCTCTCGTCATGTATTTCCTCTATGGCCGTGTGCGTGACATCGAAGTT 1254
Query 1020 GATGTCTGTGGTGGGTTTTACAAGGAGAAGGGCGAGTTCTTGTGCTTAAGCATGGGGAGG 1079
||| ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1255 GATCTCTGTGGAGGGTTTTACAAGGAGAAGAGCGAGTTCTTGTGCTTAAGTATGGGGAGG 1314
Query 1080 ATCTTGACTTCAACGGATGAGAAAATGTTGGAGAGAGGGATGAAGCAGTTAGATAGGGCA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 ATCTTGACTTCAACGGATGAGAAAATGTTGGAGAGAGGGATGAAGCAGTTAGATAGGGCA 1374
Query 1140 TTGGGCCTCTTTGAGTTTGTGTGGGAAACAGCAGGAATGAAAGAGACTCTTAACCTGCAA 1199
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1375 TTGGGTCTCTTTGAGTTTGTGTGGGAAACAGCAGGAATGAAAGAGACTCTTAACCTACAA 1434
Query 1200 GGCCATTTGTGGTGCCTTGGAGCTGAAGAAAGGTCCATCACATATCGTGGGAAGACGTTC 1259
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1435 GGCCATTTGTGGTGCCTTGGAGCTGAAGAAAGATCCATCACATATCGTGGGAAGACGTTC 1494
Query 1260 TTCGTGCATGACCTTAGTCTATGAAGTTTTGTGAGGAACAA 1300
|||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1495 TTCGTGCATGACCTTAGTCTCTGAAGTTTTGTGAGGTACAA 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5