BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg942127

Length=592
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25540.1 | Symbols: CID6 | CTC-interacting domain 6 | chr5:8...   568    3e-161


> AT5G25540.1 | Symbols: CID6 | CTC-interacting domain 6 | chr5:8891525-8892990 
REVERSE LENGTH=918
Length=918

 Score =  568 bits (307),  Expect = 3e-161
 Identities = 496/581 (85%), Gaps = 37/581 (6%)
 Strand=Plus/Plus

Query  19   AGCAATGAAGTCAGGAGGATCATCTACATTGAATCCTTACGCAGCAGCTTATGTACCACT  78
            |||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||
Sbjct  142  AGCAATGAAGTCAGGAAG-T--TCTACATTGAATCCTTACGCAGCAGCTTATGTACCACT  198

Query  79   CTCGAAAAGAGAGGGTTCTTTGGGTGATACAAAGCCTGCCACACATCATCACGTGCAGCA  138
            |||||||||||| |||||||||| |||||||||||||| |||||| || ||| |||||||
Sbjct  199  CTCGAAAAGAGAAGGTTCTTTGGTTGATACAAAGCCTGTCACACAACAACACATGCAGCA  258

Query  139  GCAGCAGCAACATCATTATG-T-AGCTCATGGTTATGGAGTCCAAGGGATGGGAAGTTAT  196
            |||||| || || ||  |   | |  | |||| |||||||| ||||| ||||||||||||
Sbjct  259  GCAGCACCACCAGCAACAACCTTAT-T-ATGGGTATGGAGTTCAAGGAATGGGAAGTTAT  316

Query  197  CCTGGCTCTCAAATGTCGCCTAAGAAGTC-C--TCTGACATGGTATACAATCATCAGTTG  253
            |  ||  |||||||||| ||||||||||| |  ||||| |||||||||||||||||| ||
Sbjct  317  CAAGGAACTCAAATGTCACCTAAGAAGTCACCATCTGAGATGGTATACAATCATCAGCTG  376

Query  254  AAAGATGAGGATTTGGAGATGGACATGGATATTGAGTACCTTTTAG-TAACATTCGCTGG  312
            || ||||||||||||||||||||||||||||||||||| || |||| || ||| | ||||
Sbjct  377  AAGGATGAGGATTTGGAGATGGACATGGATATTGAGTATCTATTAGCTA-CATACCCTGG  435

Query  313  TCTTTCACATGAGTCTATCAATGATGTTTACTTGGCTAACAGTTGTGATCTTGATGCAAC  372
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  436  TCTTTCACAAGAGTCTATCAATGATGTTTACTTGGCTAACACTTGTGATCTTGATGCAAC  495

Query  373  TATCGAAATGCTGAACCAGCTAGAGATTTACAGTACTGAAGCTCAGGAATACCTCCCAGA  432
            ||||||||||||||| || || ||||||||||||||||||||| |||||||||| |||||
Sbjct  496  TATCGAAATGCTGAATCAACTCGAGATTTACAGTACTGAAGCTGAGGAATACCTTCCAGA  555

Query  433  CACACTGGACATTGGCGATGTACCTGAGACCATCACCGAGCCTTCAACCTCGACAGTTTC  492
            ||||||||||||||| ||||||||||||| |||||| |||  | |    |      |  |
Sbjct  556  CACACTGGACATTGGTGATGTACCTGAGATCATCACAGAG--T-C----T------T--C  600

Query  493  GAAACAAAAGAATGAAGCGAAT-GcatcatcatcatcatcatcCTCGGGTATCCACAACG  551
            ||||||||||||||| | || | |  |   |||| ||||| |  |||||||||| |||||
Sbjct  601  GAAACAAAAGAATGATGGGAGTAG--TG--CATCGTCATC-T--TCGGGTATCCGCAACG  653

Query  552  C-ACCTGTATCCTCCTCCTGATTTGATGAGTCCTTAAAAAA  591
            | | | ||||||||||||||||||||| |||||||||||||
Sbjct  654  CTAAC-GTATCCTCCTCCTGATTTGATCAGTCCTTAAAAAA  693



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28482761349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5