BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942130
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25550.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1956 0.0
> AT5G25550.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:8894179-8895480 FORWARD LENGTH=1302
Length=1302
Score = 1956 bits (1059), Expect = 0.0
Identities = 1235/1317 (94%), Gaps = 24/1317 (2%)
Strand=Plus/Plus
Query 21 ATGAGGATTTATCAACCGACGTTATT-ATCATTCACCACCGTCGTCTTACTCTACATCTC 79
||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct 1 ATGAGGATTTATCAACCAACCTTATTAAT-ATTCACCACCGTCGTCTTACTCTCCATCT- 58
Query 80 CGCCGCCGTGGCTCGTGGTGGTTCCCGGCAACTTTTGTACACCCGAGACGACCCTATAAC 139
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 59 --CCGCCGTCGCTCCTGGTGGCTCCCGGCAACTTTTGTACACCCGAGACGACCCTATAAC 116
Query 140 CATACCTCCGTACCTAATCTTCGAAAACGTACGGCTCGAAAGAGCTTACGTGGCGTTACA 199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CATACCTCCGTACCTAATATTCGAAAACGTACGGCTCGAAAGAGCTTACGTGGCGTTACA 176
Query 200 AGCGTGGAAACGTACCATGATCTCTGACCCGTGGAATCTAACGGCTAACTGGTTCGGATC 259
||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 177 AGCGTGGAAACGTGCCATGATCTCTGACCCGTGGAATCTGACAACTAACTGGTTTGGATC 236
Query 260 ACGTGTGTGCGACTACAACGGTGTAGTATGCTCATCATCTCTCGACGACCCTTTGGTTAA 319
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 237 ACGTGTGTGCGACTACAACGGTGTAGTATGCTCCGAATCTCTCGACGACCCTTTGGTTAA 296
Query 320 AACTGTCTCCGGCGTTGATCTAAACCATGGAGATATCGCTGGTCACCTCCCTGAAGAGCT 379
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 297 AACTGTCTCCGGTGTTGATCTAAACCAGGGAGATATCGCTGGTCATCTCCCTGAAGAGCT 356
Query 380 TGGCCTCTTAACCGATATTGCTCTGTTTCACGTTAACTCGAACCGGTTTTGTGGTACTCT 439
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 357 TGGCCTCTTAACCGATATTGCTCTGTTTCACGTTAACTCAAACCGGTTCTGTGGTACACT 416
Query 440 CCCGGTCGGGTTTTCGCAGTTGAGTCTCCTTTTCGAACTCGAT-TTAAGTAATAACCGGT 498
||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 417 CCCGGTCGGGTTTTCGCAGTTGAGTCTCCTTTTCGAACTTGATCTT-AGTAATAACCGGT 475
Query 499 TCGCTGGTAAATTCCCGGAAGTGGTAATCGGTTTACCGAAATTAAAGTATCTTGATCTCC 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TCGCTGGTAAATTCCCGGAAGTGGTAATCGGTTTACCGAAATTAAAGTATCTTGATCTCC 535
Query 559 GGTACAACGAGTTTGAAGGTCAATTACCAGAATCTCTGTTTGATAAAGAACTAGACGCTC 618
|||||||||||||||||||| |||||||||||||| |||| |||||||| || ||||||
Sbjct 536 GGTACAACGAGTTTGAAGGTGAATTACCAGAATCTTTGTTCGATAAAGATCTTGACGCTT 595
Query 619 TGTTCCTGAATAGTAACCGGTTC-GTTAA-TAAAATCCCGGTTAACATGGGGAATTCTCC 676
| |||||||||||||||||||| | || ||||||||||||||||||||| ||||| ||
Sbjct 596 TATTCCTGAATAGTAACCGGTTTAG--AAGTAAAATCCCGGTTAACATGGGAAATTCACC 653
Query 677 GGTATCGGTTCTAGTTCTAGCATCAAACCGGTTTGAAGGATGTATACCGACGAGTTTCGG 736
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 654 GGTATCGGTTCTAGTTCTAGCCTCAAACCGGTTTGAAGGATGTATACCGCCGAGTTTCGG 713
Query 737 TAAAATGGGTAAGACTCTAAACGAGATCATCCTAATGGATAACGGTTTACAATCTTGTCT 796
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 714 TAAAATGGGTAAGACTCTAAACGAGATCATTCTTATGGATAACGGTTTACAATCTTGTAT 773
Query 797 ACCTAATGACATGGGTTTACTTCAAAACGTCACCGTTTTGGACGTTAGTTATAACTGGTT 856
||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 774 ACCTAATGACATGGGATTACTTCAAAACGTTACGGTTTTGGACATTAGTTATAACTGGTT 833
Query 857 GGTCGGAGAGTTACCAAAGTCGATGGGTCAGATGGAGAATCTTGAGGTGTTGAACGTTGA 916
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGTCGGAGAGTTACCTAAGTCGATGGGTCAGATGGAGAATCTTGAGGTGTTGAACGTTGA 893
Query 917 ACGTAACATGCTCTCCGGTTTAATACCGGAGGAGTTATGTTCGCTTGAGAAGCTAAGAGA 976
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 894 ACGTAACATGCTCTCCGGTTTAATACCGGATGAGCTATGTTCGCTTGAGAAGCTAAGAGA 953
Query 977 GTTTAGATACGGGTCTAACTATTTCACCGGAGAACCAGCCACGTGTCGTTATCTAGAGAA 1036
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 TTTTAGATACGGGTCTAACTATTTCACCGGAGAACCAGCCACGTGTCGCTATCTAGAGAA 1013
Query 1037 TTATAATTATACTATGAATTGTCT-CAAAGACGAGAGGGACCAAAGATCGATGATGGAGT 1095
|||||||||||| |||||||| || ||| |||| ||||||||||||||||||||||||||
Sbjct 1014 TTATAATTATACGATGAATTG-CTTCAAGGACGTGAGGGACCAAAGATCGATGATGGAGT 1072
Query 1096 GTAAGATGTTTTTGTCGAAACCTGTAGATTGTGACTCTTTTAAGTGTAATCCTGTCTCTT 1155
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 1073 GTAAGATGTTTTTGTCGAAACCTGTAGATTGTGACTCTTTCAAGTGTAGTCCTGGCTCTT 1132
Query 1156 CGTGTTTTTCTCCTCCTCCTCCGTCTCAAATATCACCGTCTTCGCAACCATTGGCACCGG 1215
||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 1133 CGTGTTTTTCTCCTCCTCCGA-GTC--AAATATCACCATCTTCGCAACCATTGGCACCGG 1189
Query 1216 CGCCATCTCCTACT-CAACCACCATTGTCACCACCGCCTCCGGCTAGACCATGTCCGCCG 1274
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1190 CGCCATCTCCTACTTCA-CCACCATTGTCAACACCGCCTCCGGCTAGACCATGTCCGCCG 1248
Query 1275 CCGATATACTCACCGCCTCCACCACCA---TTGTCACCGGCGCCGTCTATGAACTGA 1328
| |||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 1249 --G-TATACTCACCACCTCCACCACCACCATTGTCACTGGCGCCGTCTATGAACTGA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66365120490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5