BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg942134
Length=2344
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25590.1 | Symbols: | Protein of unknown function (DUF630 a... 3448 0.0
AT4G30130.1 | Symbols: | Protein of unknown function (DUF630 a... 56.5 1e-06
AT2G19090.1 | Symbols: | Protein of unknown function (DUF630 a... 54.7 4e-06
> AT5G25590.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr5:8906598-8909920 REVERSE LENGTH=2487
Length=2487
Score = 3448 bits (1867), Expect = 0.0
Identities = 2216/2378 (93%), Gaps = 50/2378 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaGACCTCTC-CTTTCCAAATGGGTTGTGCTCAATCTAGGGTTGATAACGAAGAA 59
|||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 51 AAAAAAAG-CCTCACTTTTTACAAATGGGTTGTGCTCAATCTAGGGTTGATAACGAAGAA 109
Query 60 GCAGTAGCTAGATGCAAAGAACGACGAAACGTAATCAAAGAAGCAGTTTCCGCAAGCAAA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 GCAGTAGCTAGATGCAAAGAACGACGAAACGTAATCAAAGAAGCAGTTTCCGCAAGCAAA 169
Query 120 GCTTTCGCCGCCGGTCATTTCGCTTACGCTATTGCTTTGAAGAACACAGGTGCTGCTTTA 179
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 170 GCATTCGCCGCCGGTCATTTCGCTTACGCTATTGCTTTGAAAAACACTGGTGCTGCTTTA 229
Query 180 AGTGACTATGGTCATGGTGAATCTGATCAAAAAGCTTTAGATGA--TGTT-TTAGATCAA 236
||||||||||| ||||| ||||||||||||||||||||||| || |||| |||||||||
Sbjct 230 AGTGACTATGGCCATGGCGAATCTGATCAAAAAGCTTTAGACGATGTGTTGTTAGATCAA 289
Query 237 CAACATTACGAGAAACAGAGTCGTAACAATGTAGATCCGGCTGCTTCTCAGCCACCTCCT 296
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 290 CAACATTACGAGAAACAGAGTCGTAACAATGTAGATCCGGCTTCTCCTCAGCCACCTCCT 349
Query 297 CCGCCACCTATTGAGAATCTTCCTCCTCCGCCTCCTCCTTTGCCTAAATTCTCTCCTTCT 356
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CCACCGCCTATTGAGAATCTTCCTCCTCCGCCTCCTCCTTTGCCTAAATTCTCTCCTTCT 409
Query 357 CCGATTAAACGTGCGATTAGTTTGCCGTCTATGGCGGTTAGAGGTCGAAAGGTTCAGACT 416
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 410 CCGATTAAACGTGCGATTAGTTTGCCTTCTATGGCGGTTAGAGGTCGAAAGGTTCAGACT 469
Query 417 TTAGATGCTATGGCGATTgaggaagaagaagaagatgaggaagaggaagaggaagtgaag 476
||||||| |||||||||||||||||| ||||||||||| || |||||||||||||| |||
Sbjct 470 TTAGATGGTATGGCGATTGAGGAAGAGGAAGAAGATGAAGAGGAGGAAGAGGAAGTTAAG 529
Query 477 gGTAGTGATATAGTCACTGCTCGTAAGGAGGAGGAAGAACCGAGAACGCCGGAGAATGTT 536
||||||| || || |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 530 GGTAGTGGTAGAGACACTGCTC---AGGAGGAGGAGGAACCGAGAACGCCGGAGAATGTT 586
Query 537 GGGAAGAATAATGGGAGGAAGAGGTTGGAGACGACAACGCCGGAGATTGTGCGTGCTTCT 596
||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 587 GGGAAGAGTAATGGGAGGAAGAGATTGGAGAAAACAACGCCGGAGATTGTGAGTGCTTCT 646
Query 597 CCGGCGAATAGTATGGCTTGGGATTATTTTTTCATGGTGGAGAATATGCCTGGACCTAAT 656
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CCGGCAAATAGTATGGCTTGGGATTATTTTTTCATGGTGGAGAATATGCCTGGACCTAAT 706
Query 657 TTAGATGATAGAGAGATTAGAAATGGTTATGAGAATCAAAGTAATCATTTTCAGTTTAAT 716
||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 707 TTAGATGATAGAGAGGTTAGGAATGGTTATGAGAATCAGAGTAGTCATTTTCAGTTTAAT 766
Query 717 GAAGAGGATGAT---GAAG-A-A-G-A-A-G-AAGA----GG----A----AAG--GTCT 752
|||||||||||| |||| | | | | | | |||| || | ||| ||||
Sbjct 767 GAAGAGGATGATGAAGAAGAAGAGGAAGAGGAAAGATCTGGGATATATCGGAAGAAGTCT 826
Query 753 GGTTCTCGTAAGGTAGTTGAGGAAATGGAGCCGAAGACGCCggagaaagttgaagaag-a 811
|||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 827 GGTTCTGGTAAAGTAGTTGAGGAGATGGAGCCTAAGACGCCGGAGAAAGTTGAAGAAGAA 886
Query 812 -a-gatgatgatgaggaggaggatgaggaaga-g--gagga--a-gaagaagaa---gtg 860
| || || |||||||| |||||||||||||| | ||||| | ||||||||| |||
Sbjct 887 GAGGAGGAAGATGAGGAAGAGGATGAGGAAGAGGAAGAGGAGGAGGAAGAAGAAGTGGTG 946
Query 861 gtggaggtgaagaagaagaagaaagggaaagctaagaTTGAGCATTCGTA-TACTGCTCC 919
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 947 GTGGAGGTAAAGAAGAAGAAGAAAGGGAAAGCTAAGATTGAGCATTCG-AGTACTGCTCC 1005
Query 920 ACCGGAGTTTCGGCGTGCGGTTGCTAAGACTACTAGTGCTGCTGCATCATCAAGTGTGAA 979
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1006 ACCGGAGTTTCGGCGTGCGGTTGCTAAG---ACTAGTGCTGCTGCATCATCAAGTGTGAA 1062
Query 980 TTTGATGAAGATTCTTGATGAGATTGATGATAGATTCCTTAAGGCGTCAGAATGTGCTCA 1039
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1063 TTTGATGAAGATTCTTGATGAGATTGATGATAGATTCCTTAAGGCTTCAGAATGTGCTCA 1122
Query 1040 AGAGGTCTCTAAGATGCTTGAAGCTACAAGGTTACATTATCACTCGAATTTCGCTGATAA 1099
|||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1123 AGAGGTTTCTAAGATGCTTGAAGCTACAAGGTTACATTACCACTCGAATTTTGCAGATAA 1182
Query 1100 CCGAGGATATGTTGATCATTCAGCTAGAGTAATGCGGGTTATAACTTGGAATAAATCGTT 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CCGAGGATATGTTGATCATTCAGCTAGAGTAATGCGGGTTATAACTTGGAATAAATCGTT 1242
Query 1160 AAGAGGCATATCCAATGGAGAAGGTGGAAAAGATGATCAAGAATCAGATGAGCATGAAAC 1219
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 AAGAGGCATTTCGAATGGAGAAGGTGGAAAAGATGATCAAGAATCAGATGAGCATGAAAC 1302
Query 1220 TCATGCTACGGTGTTGGATAAATTGTTGGCGTGGGAGAAGAAACTCTATGATGAAGTGAA 1279
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1303 TCATGCTACGGTGTTGGATAAATTGTTAGCATGGGAGAAGAAACTCTATGATGAAGTGAA 1362
Query 1280 GCAAGGTGAGCTTATGAAGATAGAGTATCAGAAGAAGGTATCTTTACTAAACAGGCATAA 1339
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1363 GCAAGGTGAGCTTATGAAGATAGAGTATCAGAAGAAGGTATCTTTACTCAACAGGCATAA 1422
Query 1340 AAAACGAGGTGCGAGTGCTGAAACCGTGGAGAAAACAAAGGCGGCTGTGAGTCATCTACA 1399
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1423 GAAACGAGGTGCGAGTGCAGAGACCGTGGAGAAAACAAAGGCGGCTGTAAGTCATCTACA 1482
Query 1400 CACAAGATATATCGTTGACATGCAATCCATGGATTCAACGGTTTCCGAAGTAAACCGTTT 1459
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1483 CACAAGATATATTGTTGACATGCAATCCATGGATTCAACGGTTTCTGAAGTAAACCGTTT 1542
Query 1460 AAGGGATGATCAATTGTATCCAAGACTTGTTGCCTTAGTTGAAGGAATGGCGAAGATGTG 1519
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1543 AAGGGATGATCAATTGTATCCAAGACTTGTTGCCTTAGTTGAAGGGATGGCGAAGATGTG 1602
Query 1520 GACAAACATGTGCATACACCATGACACCCAACTAGGTATTGTTGGAGAGCTAAAATCCCT 1579
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1603 GACAAACATGTGTATACACCACGACACCCAACTAGGTATTGTTGGAGAGCTAAAGGCCCT 1662
Query 1580 TGAAATCTCAACTTCTCTCAAAGAAACCACAAAGCAACATCACCATCAGACCCGCCAGTT 1639
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1663 TGAAATCTCAACTTCTCTCAAAGAAACCACAAAACAGCATCACCATCAGACTCGCCAGTT 1722
Query 1640 CTGCACAGTCTTGGAAGAATGGCATATTCAGTTCGATAGACTCGTGACCCACCAGAAGCA 1699
|||||| |||||||||||||||||| |||||||||||| ||| || ||||| ||||||||
Sbjct 1723 CTGCACCGTCTTGGAAGAATGGCATGTTCAGTTCGATACACTTGTCACCCATCAGAAGCA 1782
Query 1700 GTACATTAACGCTCTCAACAGCTGGTTAAAGCTAAACCTTATCCCCATTGAGAGCAGTCT 1759
|||||||||| ||||||||| |||| | |||||||| || |||||||| ||||| |||||
Sbjct 1783 GTACATTAACTCTCTCAACAACTGGCTGAAGCTAAATCTAATCCCCATCGAGAGTAGTCT 1842
Query 1760 TAAAGAGAAAGTTTCATCACCTCCAAGGCCTCAGCGCCCGCCAATCCAAGCCCTTCTCCA 1819
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1843 TAAAGAGAAAGTTTCATCACCTCCAAGGCCTCAGCGCCCGCCAATCCAAGCTCTTCTCCA 1902
Query 1820 CTCATGGCACGACCGTCTTGAGAAACTTCCCGATGAAGTCGCCAAATCAGCTATTTCCTC 1879
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1903 CTCATGGCATGACCGTCTTGAGAAACTTCCCGATGAAGTCGCCAAATCAGCTATCTCCTC 1962
Query 1880 TTTTGCCGAAGTCATCAAAACCATCTTACTTCATCAGGAGGATGAAATGAAACTGAAGGA 1939
||| || | |||||||||||||||||| || || ||||| || || ||||||||||| ||
Sbjct 1963 TTTCGCGGCAGTCATCAAAACCATCTTGCTGCACCAGGAAGAGGAGATGAAACTGAAAGA 2022
Query 1940 GAAATGCGAAGAAACACGAAGGGAGTTTATACGGAAGAAACAAGGTTTTGAGGATTGGTA 1999
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2023 GAAATGCGAAGAAACACGAAGAGAGTTTATACGGAAGAAGCAAGGTTTTGAGGATTGGTA 2082
Query 2000 TCAGAAACATTTGCAGAAGAGAGGACCAACAGAGGAAGCTGAAGGCGGGGACGACACAAC 2059
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2083 TCAAAAACATTTGCAAAAGAGAGGGCCAACAGAGGAAGCTGAAGGCGGGGACGACGCAAC 2142
Query 2060 AACGAGCGCTAGGGATCATGTGACAGAAAGGAGAATTGTTGTGGAGACACTGaaaaaaaG 2119
||| ||| | || |||||||| ||||| |||||||||| ||||||||||||||| |||||
Sbjct 2143 AACAAGCTCCAGAGATCATGTCACAGAGAGGAGAATTGCTGTGGAGACACTGAAGAAAAG 2202
Query 2120 ACTTGAAGAGGAAGAAGAAGCTCACCAGAGACATTGTGTTCAGGTAAGGGAGAAATCTCT 2179
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2203 GCTTGAAGAAGAAGAAGAAGCTCACCAGAGACATTGTGTTCAGGTGAGGGAGAAATCTCT 2262
Query 2180 CAACAGTTTGAAGATCAGATTGCCTGAGATCTTCAGGGCACTGTCTGATTATGCTCACGC 2239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2263 AAACAGTTTGAAGATCAGATTGCCTGAGATCTTCAGGGCACTGTCTGATTATGCTCACGC 2322
Query 2240 TTGTGCTGACTCATACGAGAAGCTCAGAATCATATCGCAGAGTCACAAATCAAACGGTGG 2299
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2323 TTGTGCTGACTCATATGAGAAGCTCAGAATCATATCGCAGAGTCAGAAATCAAACGGTGG 2382
Query 2300 AGCCACTGAATCTTCTTGAACCAGTTTTAGTTCT-TTT 2336
|||||||||||||||||||||||||||||||||| |||
Sbjct 2383 AGCCACTGAATCTTCTTGAACCAGTTTTAGTTCTATTT 2420
> AT4G30130.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr4:14734819-14737978 FORWARD LENGTH=2506
Length=2506
Score = 56.5 bits (30), Expect = 1e-06
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1248 GCGTGGGAGAAGAAACTCTATGATGAAGTGAAG 1280
||||||||||||||||||||||||||||| |||
Sbjct 1365 GCGTGGGAGAAGAAACTCTATGATGAAGTCAAG 1397
> AT2G19090.1 | Symbols: | Protein of unknown function (DUF630
and DUF632) | chr2:8265178-8267879 REVERSE LENGTH=2445
Length=2445
Score = 54.7 bits (29), Expect = 4e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1248 GCGTGGGAGAAGAAACTCTATGATGAAGT 1276
|||||||||||||||||||||||||||||
Sbjct 1465 GCGTGGGAGAAGAAACTCTATGATGAAGT 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116364863310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5